- Basic information
- CohesinDB ID: CDBP00418913
- Locus: chr21-37548403-37549384
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Data sourse: GSE138405, GSE67783, ENCSR153HNT
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Cell type: K-562, Hela-Kyoto, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
95% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 41%,
"5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, FOSL1, ZNF391, PGR, SMARCA2, ZNF660, ZSCAN5C, MEIS2, XBP1, PATZ1, ZNF101, FOXA1, PBX2, ZNF596, ZFHX2, LYL1, INSM2, NFIC, CDK7, ZFP64, RUNX1T1, CTCFL, ZBTB44, PRDM1, IKZF3, RUNX3, CBFB, EGR1, ZNF189, SMARCE1, MECOM, TP63, ZSCAN4, MZF1, ZNF467, ZNF629, JMJD1C, ELF1, ZNF121, TRIM28, TEAD1, SNAI2, NFE2L2, KLF10, ZNF624, ESR1, OCA2, LMO2, ZNF561, ZFP91, CTCF, TCF12, ZNF577, EP300, KLF1, ZNF695, ZBTB20, LMO1, ARID5B, DPF2, PRDM4, TRIM24, SOX6, ZNF423, E2F1, ZNF528, SMC1, TEAD4, KLF3, PDX1, EED, GLIS1, ZSCAN5D, MYCN, POU5F1, BRD3, ZNF263, ID3, ZNF778, ZSCAN21, ZBTB17, ZBTB48, ZSCAN5A, ZBTB1, CTBP1, MTA2, SRF, ZNF488, ZMYND8, NBN, STAT1, SP4, ERG, ZBTB21, ZNF341, ZBTB8A, ETS1, MYC, SMARCA4, ZNF2, TSHZ1, RAD21, FOXP2, GRHL3, ZKSCAN2, ARID1B, GABPA, STAT3, UBN1, NKX3-1, IKZF1, NFE2, RCOR1, ZNF639, ZNF285, NR3C1, CEBPB, KMT2A, EZH2, KLF8, FEZF1, MRTFA, ZHX2, SPI1, ZNF664, KLF17, HDAC2, GATA2, ZNF146, ZSCAN29, SIX2, FLI1, MXI1, MRTFB, ZNF76, ZNF554, ATF1, RUNX1, SMC1A, MAFG, HDAC1, NKX2-2, ZNF707, CEBPA, ZNF335, ZFX, NFKBIA, AFF4, LDB1, SMAD3, ZBTB12, ZNF770, ERG3, ZNF513, TWIST1, PRDM10, SMARCC1, ZNF18, CBX4, ZNF35, RUNX2, ZSCAN30, OSR2, ZNF184, SP3, ARNT, NRF1, PBX4, HMGB2, ATF2, ZEB2, ZNF518A, ETV6, FOXM1, ZNF10, SP2, CDK8, FOS, SMARCB1, CBFA2T3, PML, ZXDB, ZNF558, SCRT2, MYB, SMAD1, CEBPD, ZNF3, ZMYM3, KLF9, C11orf30, L3MBTL2, TBX5, SETDB1, EVI1, KLF16, ZNF317, BCL11A, USF1, OVOL3, ZBTB7A, ZHX1, ATF7, PHIP, TCF3, BCOR, PRDM6, ZNF623, SMC3, ELL2, ZNF34, STAG1, STAG2, CXXC4, ZNF394, PAX7, MLLT1, TRP47, CBFA2T2, PPARG, TBL1X, FOXA2, ZNF716, MEIS1, RBBP5, CBX3, ZNF600, ZNF692, ZSCAN16, WT1, ZNF30, ZNF574, ZBTB33, CDK9, ZNF580, KLF7, HOXB13, KDM1A, YY1, RELA, NEUROD1, ZNF610, SP140, ZIC2, HIF1A, ZFP36, OTX2, GATA3, NCOR1, TAL1, MAX, ZNF449, ZNF143, GATA1, BCL6, ZFP69B, BCL11B, SP7, NCOA3, GFI1B, TCF7L2, ZNF213, PKNOX1, ZSCAN22, MYOD1, BRD2, ZNF843, AR, ZBTB16, ZBTB40, ZNF324, ZNF366, HEXIM1, ZBTB42, RB1, HSF1, ZBTB26, NOTCH3, BRD4, SCRT1, MYNN, JUND, RNF2, MAZ, ILF3, ZSCAN23, ZNF24, AHR
- Target gene symbol (double-evidenced CRMs): DYRK1A,VPS26C,TTC3,KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
ENSG00000182670,
ENSG00000157538,
ENSG00000157540,
ENSG00000157542,
- Related loop:
chr21:36950000-36975000~~chr21:37550000-37575000,
chr21:36975000-37000000~~chr21:37550000-37575000,
chr21:37050000-37075000~~chr21:37525000-37550000,
chr21:37200000-37225000~~chr21:37525000-37550000,
chr21:37200000-37225000~~chr21:37550000-37575000,
chr21:37225000-37250000~~chr21:37525000-37550000,
chr21:37225000-37250000~~chr21:37550000-37575000,
chr21:37250000-37275000~~chr21:37550000-37575000,
chr21:37375000-37400000~~chr21:37525000-37550000,
chr21:37525000-37550000~~chr21:37625000-37650000,
chr21:37525000-37550000~~chr21:38075000-38100000,
chr21:37525000-37550000~~chr21:38150000-38175000,
chr21:37546322-37547628~~chr21:37581687-37583761,
chr21:37550000-37575000~~chr21:37650000-37675000,
chr21:37550000-37575000~~chr21:38350000-38375000,