- Basic information
- CohesinDB ID: CDBP00418923
- Locus: chr21-37567984-37568218
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Data sourse: ENCSR000BLD, GSE67783
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Cell type: H1-hESC, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
95% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 62%,
"14_ReprPCWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): HLCS,KCNJ6,VPS26C,TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000159267,
ENSG00000182670,
ENSG00000157538,
ENSG00000157542,
- Related loop:
chr21:36950000-36975000~~chr21:37550000-37575000,
chr21:36975000-37000000~~chr21:37550000-37575000,
chr21:37166297-37167797~~chr21:37563454-37566884,
chr21:37200000-37225000~~chr21:37550000-37575000,
chr21:37219712-37222158~~chr21:37563130-37566817,
chr21:37220147-37222181~~chr21:37562857-37565652,
chr21:37220161-37222184~~chr21:37563560-37566497,
chr21:37225000-37250000~~chr21:37550000-37575000,
chr21:37250000-37275000~~chr21:37550000-37575000,
chr21:37368049-37369282~~chr21:37563670-37565316,
chr21:37550000-37575000~~chr21:37650000-37675000,
chr21:37550000-37575000~~chr21:38350000-38375000,
chr21:37562596-37565431~~chr21:37641584-37643972,
chr21:37562693-37565509~~chr21:37657926-37660241,