- Basic information
- CohesinDB ID: CDBP00418928
- Locus: chr21-37584556-37585034
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Data sourse: GSE206145, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: K-562, Fibroblast, RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
95% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 73%,
"14_ReprPCWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, AR, E2F6, ZSCAN5D, ZFX, MEIS2, XBP1, GRHL3, WT1, ZSCAN5A, NOTCH3, PBX2, SCRT1, ZNF528, BRD4, MAX, CTCF, GATA1, GSPT2, HNF4A
- Target gene symbol (double-evidenced CRMs): VPS26C,TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000182670,
ENSG00000157538,
- Related loop:
chr21:36938603-36940392~~chr21:37581749-37583648,
chr21:36976410-36978425~~chr21:37581857-37583566,
chr21:36976414-36978410~~chr21:37581771-37583697,
chr21:36976414-36978490~~chr21:37581977-37583577,
chr21:37078878-37080096~~chr21:37582024-37583384,
chr21:37150000-37175000~~chr21:37575000-37600000,
chr21:37165914-37167790~~chr21:37581870-37583744,
chr21:37165924-37167794~~chr21:37581806-37583572,
chr21:37165928-37167803~~chr21:37581799-37583709,
chr21:37165939-37167680~~chr21:37581819-37583687,
chr21:37165948-37167801~~chr21:37581734-37583636,
chr21:37165963-37167815~~chr21:37581749-37583648,
chr21:37166201-37167778~~chr21:37581833-37583520,
chr21:37219743-37222181~~chr21:37581749-37583648,
chr21:37219750-37222176~~chr21:37580199-37581548,
chr21:37219773-37222194~~chr21:37581619-37583704,
chr21:37219804-37222187~~chr21:37581794-37583687,
chr21:37225000-37250000~~chr21:37575000-37600000,
chr21:37250000-37275000~~chr21:37575000-37600000,
chr21:37461848-37464293~~chr21:37581652-37583693,
chr21:37496463-37497911~~chr21:37581835-37583666,
chr21:37527492-37529167~~chr21:37581619-37583658,
chr21:37546322-37547628~~chr21:37581687-37583761,