- Basic information
- CohesinDB ID: CDBP00418935
- Locus: chr21-37593857-37595006
-
Data sourse: GSE105028, GSE67783, ENCSR153HNT, GSE86191
-
Cell type: K-562, HCT-116, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
95% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 47%,
"14_ReprPCWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZSCAN5C, SOX2, XBP1, FOXA1, SUZ12, NFIC, CHD7, MORC2, PAX5, ZNF121, LMO2, ESR1, OCA2, CTCF, TCF12, EP300, ZNF33A, RYBP, E2F6, E2F4, ZNF528, SMC1, TEAD4, NANOG, CHD8, POU2F2, ZSCAN5D, MYCN, POU5F1, ID3, CTBP1, DUX4, ZBTB48, SP4, ETS1, MYC, EOMES, SMARCA4, RAD21, GRHL3, GABPA, APC, IKZF1, NR2F6, NR3C1, SRSF3, CREB1, EZH2, BMPR1A, GRHL2, HDAC2, GATA2, FLI1, SMC1A, ZFX, SMAD3, ZNF770, CBX8, ERG3, TET2, SMARCC1, ZNF18, ZNF384, NOTCH1, SMAD2, OSR2, ARNT, BACH1, ATF2, SMAD4, FOXM1, ETV6, CHD1, MED1, ZNF680, SMAD1, L3MBTL2, TBX5, USF1, BCL11A, NIPBL, SP1, NKX2-5, REST, ZBTB7A, ASH2L, PCGF2, BCOR, FOXP1, STAG1, ZNF207, WT1, ZBTB33, KDM1A, YY1, RELA, MCM3, SP140, ZIC2, HIF1A, MGA, TAL1, MAX, ZNF143, PLAG1, KLF4, NCOA3, NR2F1, ZNF334, T, AR, TAF1, HSF1, RNF2, BRD4, ILF3, MAZ
- Target gene symbol (double-evidenced CRMs): TTC3,VPS26C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops