- Basic information
- CohesinDB ID: CDBP00418936
- Locus: chr21-37595795-37596355
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Data sourse: GSE67783, GSE111913, ENCSR153HNT, GSE86191
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Cell type: K-562, RT-112, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
95% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 51%,
"14_ReprPCWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, CHD8, FOXA2, MYCN, RUNX1T1, SIN3A, ZFX, POU4F2, XBP1, ZNF317, ZBTB48, ZSCAN5A, WT1, TET2, TBP, ERG, YY1, RELA, ATF3, MCM3, SP140, GRHL3, HIF1A, ETV6, TP63, TRIM28, SCRT2, EZH2, OCA2, MYOD1, CTCF, PAX3-FOXO1, GATA6, HSF1, SCRT1, BRD4, MAZ, ZNF528, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): TTC3,VPS26C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops