Deatailed information for cohesin site CDBP00418938
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00418938
- Locus: chr21-37598275-37598568
- Data sourse: ENCSR153HNT, GSE86191
- Cell type: K-562, HCT-116
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 95% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 57%,
"14_ReprPCWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: GLIS1, CBFA2T2, BRD1, ZNF263, MYCN, TOP2A, ID3, ZFX, TEAD4, XBP1, WT1, ZSCAN5A, FOXA1, NBN, PBX2, BCL3, ERG, RELA, NFKB2, EHMT2, MYC, EOMES, SMARCA4, ARID1B, MCM3, PRDM1, GRHL3, HIF1A, ZNF532, FOXK2, PRDM9, TAL1, XRCC5, MAX, NKX3-1, CBFA2T3, GATA1, IKZF1, MTA1, ZNF449, PBX3, NR3C1, CEBPB, CEBPG, CEBPD, PIAS1, EZH2, LMO2, OCA2, NFKB1, MYOD1, EVI1, JUN, CTCF, BAF155, NUTM1, SPI1, AR, GATA6, GATA2, TRIM24, RNF2, HNRNPLL, BRD4, SMC3, PDX1, ZNF316
- Target gene symbol (double-evidenced CRMs): TTC3,VPS26C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene: ENSG00000182670, ENSG00000157538,
- Related loop: chr21:34350000-34375000~~chr21:37600000-37625000, chr21:37150000-37175000~~chr21:37575000-37600000, chr21:37225000-37250000~~chr21:37575000-37600000, chr21:37225000-37250000~~chr21:37600000-37625000, chr21:37250000-37275000~~chr21:37575000-37600000,
Tools:
- Assay
