- Basic information
- CohesinDB ID: CDBP00418939
- Locus: chr21-37606006-37606950
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Data sourse: GSE116344, GSE67783, ENCSR153HNT, GSE83726
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Cell type: K-562, RH4, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
95% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 48%,
"14_ReprPCWk": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, ZNF195, ZNF496, LCORL, ZNF621, XBP1, FOXA1, SUZ12, ZFHX2, HDGF, ZNF274, ZBTB5, CHD7, PRDM1, ZNF444, ZNF532, SMARCE1, PAX5, ZNF736, ZNF467, MYOG, TEAD1, RBM39, OCA2, ZIK1, CTCF, E4F1, NUTM1, ZNF776, EHMT2, YBX1, CHD8, ZSCAN5D, ZNF239, POU5F1, MYCN, TOP2A, CTBP1, MTA2, ZBTB17, NONO, DDX5, ERG2, ZNF300, ERG, ASCL1, MCM5, MYC, ZNF2, RAD21, GRHL3, FOXK2, GABPA, ZNF398, IKZF1, NFE2, VDR, CEBPB, ARHGAP35, HES1, SPI1, ZNF257, HDAC2, GATAD2B, ZNF785, ZNF766, SALL2, MAFG, SMC1A, HDAC1, ZNF707, ZFX, ZNF534, ZNF473, MCM2, TRIM22, CREBBP, ZBTB2, ZNF169, NFIB, ARNT, MED1, PIAS1, C11orf30, BCL11A, ZNF605, FOXP1, SMC3, MLLT1, STAG1, FOXA2, ZNF207, GTF2B, WT1, ZNF662, ZKSCAN1, RELA, NEUROD1, AHR, ZNF521, ZNF282, MCM3, HIF1A, OTX2, ZNF311, MAX, ZSCAN26, ZNF143, KLF4, NR2F2, ZNF544, KDM5B, ZNF547, BCL6B, MYOD1, EGR2, T, AR, ZBTB40, ZNF366, EGR1, RNF2, BRD4, CLOCK, ZNF316
- Target gene symbol (double-evidenced CRMs): VPS26C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 9
- Related genes and loops