- Basic information
- CohesinDB ID: CDBP00418941
- Locus: chr21-37614362-37614857
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Data sourse: GSE120943, ENCSR153HNT, GSE98367
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Cell type: K-562, Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
95% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 44%,
"14_ReprPCWk": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, CHD8, BCL6, CBX3, POU5F1, HDAC1, ZNF621, NME2, ZFX, XBP1, ZBTB17, MTA2, CTBP1, ZBTB48, FOXA1, ZNF662, ERG3, SUZ12, DDX5, ZKSCAN1, PRDM10, BCL3, RELA, HDGF, TARDBP, ZNF384, MCM5, MYC, ZBTB5, MCM3, ZNF184, ARNT, NFIB, ZNF532, ZNF311, ZNF48, FOXK2, PAX5, ZSCAN4, GATA1, ZNF143, ZNF639, MAF, CEBPB, TEAD3, TRIM28, ZNF121, KDM5B, ESR1, PKNOX1, ARHGAP35, OCA2, ZNF687, SETDB1, CTCF, SPI1, NUTM1, E4F1, MNT, PHF20, IRF1, HDAC2, GATA2, SSRP1, EGR1, SIX2, RNF2, BRD4, SMARCA5, ZNF512B, BCOR, ZNF280A, TEAD4, MLLT1
- Target gene symbol (double-evidenced CRMs): VPS26C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 0
- Related genes and loops