- Basic information
- CohesinDB ID: CDBP00418942
- Locus: chr21-37615866-37616245
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Data sourse: GSE67783, GSE86191, GSE206145, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: RPE, Fibroblast, HCT-116, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
95% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 52%,
"14_ReprPCWk": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, MEIS2, XBP1, FOXA1, PBX2, ZFHX2, HDGF, ATF3, ZNF532, TP63, LMO2, ESR1, OCA2, CTCF, JUN, BAF155, NUTM1, SOX6, SMC1, ZNF350, TFAP2C, EED, GLIS1, CHD8, BRD1, ZSCAN5D, MYCN, POU5F1, RUNX1T1, KDM4C, TOP2A, ZBTB48, DUX4, NBN, ERG2, ERG, MYC, RFX1, RAD21, GRHL3, GABPA, STAT3, NKX3-1, PRDM14, IKZF1, NR3C1, ZNF750, CEBPB, EZH2, GRHL2, GATA2, GATAD2B, SIX2, FLI1, RELB, NCOA2, RUNX1, SMC1A, NKX2-2, ZFX, TET2, CBX8, ERG3, RUNX2, GATA4, ARNT, SOX11, ATF2, HMBOX1, FOXM1, FOS, GMEB1, PIAS1, REST, SMC3, MLLT1, STAG1, STAG2, NFATC3, CBFA2T2, MEF2B, FOXA2, EBF1, ZSCAN16, WT1, HOXB13, YY1, RELA, JUNB, SP140, HIF1A, BATF, MAF1, MAX, MTA1, ZNF512, KDM5B, ZNF687, PKNOX1, ZNF334, NFKB1, EGR2, BHLHE40, AR, ZNF366, RNF2, NOTCH3, BRD4, MAZ
- Target gene symbol (double-evidenced CRMs): VPS26C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 0
- Related genes and loops