- Basic information
- CohesinDB ID: CDBP00418949
- Locus: chr21-37634872-37635580
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Data sourse: GSE132649, GSE67783, ENCSR153HNT
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Cell type: K-562, T-47D, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
95% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 48%,
"14_ReprPCWk": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZFX
- Target gene symbol (double-evidenced CRMs): VPS26C,DYRK1A,HLCS,KCNJ6,TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159267,
ENSG00000182670,
ENSG00000157538,
ENSG00000157540,
ENSG00000157542,
- Related loop:
chr21:36975000-37000000~~chr21:37625000-37650000,
chr21:37150000-37175000~~chr21:37625000-37650000,
chr21:37175000-37200000~~chr21:37625000-37650000,
chr21:37200000-37225000~~chr21:37625000-37650000,
chr21:37225000-37250000~~chr21:37625000-37650000,
chr21:37250000-37275000~~chr21:37625000-37650000,
chr21:37350000-37375000~~chr21:37625000-37650000,
chr21:37450000-37475000~~chr21:37625000-37650000,
chr21:37475000-37500000~~chr21:37625000-37650000,
chr21:37500000-37525000~~chr21:37625000-37650000,
chr21:37525000-37550000~~chr21:37625000-37650000,