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Basic information

CohesinDB ID: CDBP00418951

Locus: chr21-37639797-37640540

Data sourse: ENCSR000BLD, GSE101921

Cell type: H1-hESC, HCAEC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Rad21,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 95% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 45%, "14_ReprPCWk": 44%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NKX2-2, XBP1, ERG, RELA, ETS1, MYC, SMARCA4, RAD21, GRHL3, ZNF532, TAL1, ETV6, MAX, EZH2, ZNF334, USF2, CTCF, ELF3, USF1, SPI1, NUTM1, DPF2, GATA2, IRF4, IKZF2, BRD4, ZNF350, EED

Target gene symbol (double-evidenced CRMs): HLCS,TTC3,DYRK1A,KCNJ6,VPS26C

Function elements

Human SNPs: .

Number of somatic mutations (coding): 6

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000159267, ENSG00000182670, ENSG00000157538, ENSG00000157540, ENSG00000157542,

eachgene

Deatailed information for cohesin site CDBP00418951