- Basic information
- CohesinDB ID: CDBP00418953
- Locus: chr21-37644571-37645342
-
Data sourse: GSE105028, GSE101921, GSE97394, GSE94872, GSE64758
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Cell type: H1-hESC, HUVEC, HCAEC, H9-hESC, HUES64
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
95% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"14_ReprPCWk": 44%,
"15_Quies": 42%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, SOX2, HNF1A, XBP1, FOXA1, PBX2, BMI1, CHD7, PRDM1, ZNF532, MECOM, PAX5, TP63, HDAC3, SNAI2, ESR1, JUN, CTCF, BAF155, EP300, NUTM1, E2F1, ZNF528, SMC1, TEAD4, PDX1, TFAP2C, NANOG, CHD8, POU2F2, BRD1, POU5F1, ZNF263, MYCN, ZBTB48, DUX4, STAT1, ZSCAN5A, DDX5, HNF4G, ERG, OGG1, ETS1, MYC, MCM5, SMARCA4, RAD21, GRHL3, PROX1, GABPA, STAT3, NKX3-1, RCOR1, NR3C1, ZNF750, EZH2, GRHL2, EBF3, TRPS1, EHF, HDAC2, GATA2, FLI1, NCOA2, RUNX1, BCL6, SMC1A, NKX2-2, ZFX, SMAD3, ZNF770, CBX8, ERG3, PRDM10, CREBBP, ZNF384, RUNX2, GR, PBX4, ARNT, DAXX, NRF1, HMGB2, ATF2, FOS, MED1, ZMYM3, PIAS1, NIPBL, SP1, TFAP2A, ARID1A, ATF7, ASH2L, BCOR, FOXP1, SMC3, STAG1, STAG2, PAX7, TRP47, CBFA2T2, MEF2B, PPARG, GTF2B, WT1, HOXB13, KDM1A, YY1, RELA, JUNB, NEUROD1, ZNF266, MCM3, SP140, ZFP36, HIF1A, OTX2, GATA3, TAL1, MAX, NRIP1, GATA1, ZNF143, CBX2, TLE3, NCOA3, NR2F2, TP53, PKNOX1, NFKB1, AR, RNF2, NOTCH3, BRD4, JUND, CLOCK, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): VPS26C,KCNJ6,DYRK1A,TTC3,HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159267,
ENSG00000182670,
ENSG00000157538,
ENSG00000157540,
ENSG00000157542,
- Related loop:
chr21:36575000-36600000~~chr21:37650000-37675000,
chr21:36938657-36940545~~chr21:37641615-37643952,
chr21:36975000-37000000~~chr21:37625000-37650000,
chr21:36975000-37000000~~chr21:37650000-37675000,
chr21:37118796-37120506~~chr21:37641349-37644042,
chr21:37150000-37175000~~chr21:37625000-37650000,
chr21:37150000-37175000~~chr21:37650000-37675000,
chr21:37165919-37167804~~chr21:37641816-37643880,
chr21:37165919-37167819~~chr21:37641580-37643713,
chr21:37165941-37167805~~chr21:37641570-37643772,
chr21:37165963-37167815~~chr21:37641599-37643616,
chr21:37166002-37167735~~chr21:37641416-37644157,
chr21:37175000-37200000~~chr21:37625000-37650000,
chr21:37200000-37225000~~chr21:37625000-37650000,
chr21:37200000-37225000~~chr21:37650000-37675000,
chr21:37219743-37222181~~chr21:37641599-37643616,
chr21:37219804-37222187~~chr21:37641615-37643952,
chr21:37219959-37222123~~chr21:37641546-37643999,
chr21:37219960-37222181~~chr21:37641580-37643713,
chr21:37225000-37250000~~chr21:37625000-37650000,
chr21:37225000-37250000~~chr21:37650000-37675000,
chr21:37250000-37275000~~chr21:37625000-37650000,
chr21:37250000-37275000~~chr21:37650000-37675000,
chr21:37350000-37375000~~chr21:37625000-37650000,
chr21:37350000-37375000~~chr21:37650000-37675000,
chr21:37450000-37475000~~chr21:37625000-37650000,
chr21:37450000-37475000~~chr21:37650000-37675000,
chr21:37461731-37464184~~chr21:37641416-37644157,
chr21:37475000-37500000~~chr21:37625000-37650000,
chr21:37500000-37525000~~chr21:37625000-37650000,
chr21:37525000-37550000~~chr21:37625000-37650000,
chr21:37550000-37575000~~chr21:37650000-37675000,
chr21:37562596-37565431~~chr21:37641584-37643972,
chr21:37650000-37675000~~chr21:37800000-37825000,
chr21:37650000-37675000~~chr21:38350000-38375000,