- Basic information
- CohesinDB ID: CDBP00418968
- Locus: chr21-37686462-37687749
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Data sourse: ENCSR000BLD, GSE67783, GSE86191, GSE105028, GSE206145-NatGen2015
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Cell type: H1-hESC, Fibroblast, HCT-116, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: Mau2,SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
95% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 49%,
"14_ReprPCWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOXO1, CHD8, FOXA2, NKX2-2, POU5F1, MEIS1, KDM4C, ZFX, MEIS2, XBP1, NME2, WT1, ZSCAN5A, FOXA1, PBX2, CDK9, ERG, RELA, MYC, SMAD2, RAD21, RXRA, TP63, MAFB, NKX3-1, HAND2, MAF, CEBPB, PDX1, NR2F2, TRIM28, KMT2A, TFAP2C, SNAI2, TP53, PKNOX1, ZNF334, CTCF, MAFK, SPI1, TFAP2A, BCL11A, FLI1, NOTCH3, SCRT1, BRD4, MAZ, SMC3, TBX2, STAG1, ZNF316
- Target gene symbol (double-evidenced CRMs): PSMG1,KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 16
- Number of somatic mutations (non-coding): 0
- Related genes and loops