- Basic information
- CohesinDB ID: CDBP00418970
- Locus: chr21-37693407-37693614
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Data sourse: GSE206145, GSE86191
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Cell type: RPE, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
95% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 60%,
"14_ReprPCWk": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1T1, SOX2, ZFX, ZNF534, XBP1, WT1, ERG, YY1, ZNF384, RUNX2, ONECUT1, SP140, ARNT, GRHL3, ZNF532, EZH2, ZNF334, CTCF, PAX8, BRD4, MAZ, ZNF175
- Target gene symbol (double-evidenced CRMs): PSMG1,KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops