- Basic information
- CohesinDB ID: CDBP00418971
- Locus: chr21-37696949-37697211
-
Data sourse: GSE116344, GSE83726
-
Cell type: RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
95% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 44%,
"14_ReprPCWk": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: E2F6, ZNF263, SCRT2, RUNX1T1, ZFX, RAD21, SCRT1, MYOD1, SMC3, CTCF
- Target gene symbol (double-evidenced CRMs): KCNJ6,PSMG1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157542,
ENSG00000183527,
- Related loop:
chr21:37675000-37700000~~chr21:38325000-38350000,
chr21:37675000-37700000~~chr21:38350000-38375000,
chr21:37675000-37700000~~chr21:39125000-39150000,
chr21:37675000-37700000~~chr21:39150000-39175000,
chr21:37699607-37702263~~chr21:37914870-37917976,
chr21:37699607-37702263~~chr21:38125790-38127981,
chr21:37699607-37702263~~chr21:38158064-38160479,
chr21:37699607-37702263~~chr21:38355308-38357138,
chr21:37699652-37702225~~chr21:38351825-38353553,
chr21:37699652-37702225~~chr21:38355277-38357273,
chr21:37699679-37701740~~chr21:38355149-38357340,
chr21:37699731-37701840~~chr21:38125767-38127866,
chr21:37699733-37701770~~chr21:38125761-38128067,
chr21:37699733-37701770~~chr21:38355287-38357113,
chr21:37699764-37701688~~chr21:37915637-37917611,
chr21:37699764-37701688~~chr21:38125740-38127873,
chr21:37699764-37701688~~chr21:38351572-38353692,
chr21:37699764-37701688~~chr21:38355442-38357264,
chr21:37699767-37701789~~chr21:38125763-38127934,
chr21:37699767-37701789~~chr21:38351823-38353474,
chr21:37699767-37701789~~chr21:38355110-38357173,
chr21:37699768-37702167~~chr21:38351780-38353719,
chr21:37699774-37701724~~chr21:38355449-38357172,
chr21:37699776-37701715~~chr21:38351536-38353710,
chr21:37699776-37701715~~chr21:38355168-38357210,
chr21:37699782-37701775~~chr21:38125778-38127949,
chr21:37699782-37701784~~chr21:38355275-38357287,
chr21:37699790-37701835~~chr21:38169663-38172851,
chr21:37699790-37701835~~chr21:38351755-38353771,
chr21:37699790-37701835~~chr21:38355274-38357174,
chr21:37699792-37701710~~chr21:38351797-38353501,
chr21:37699792-37701710~~chr21:38355282-38357170,
chr21:37699800-37701800~~chr21:38125754-38127987,
chr21:37699800-37701800~~chr21:38169503-38172844,
chr21:37699813-37701825~~chr21:38125771-38127931,
chr21:37699825-37701662~~chr21:38355294-38357093,
chr21:37699827-37701713~~chr21:38355322-38357346,
chr21:37699831-37701768~~chr21:38125934-38127923,
chr21:37699831-37701768~~chr21:38355325-38357124,
chr21:37699842-37701862~~chr21:38125749-38127915,
chr21:37699849-37701736~~chr21:38125958-38127687,
chr21:37699862-37702222~~chr21:37915255-37918377,
chr21:37699862-37702222~~chr21:38125791-38127926,
chr21:37699862-37702222~~chr21:38355436-38357215,
chr21:37699932-37701752~~chr21:38126125-38127630,
chr21:37699965-37701774~~chr21:38355272-38357307,
chr21:37699988-37701699~~chr21:38126068-38127606,
chr21:37699994-37701579~~chr21:38126227-38127525,
chr21:37700000-37725000~~chr21:37825000-37850000,
chr21:37700000-37725000~~chr21:37875000-37900000,
chr21:37700000-37725000~~chr21:37900000-37925000,
chr21:37700000-37725000~~chr21:37925000-37950000,
chr21:37700000-37725000~~chr21:37950000-37975000,
chr21:37700000-37725000~~chr21:38050000-38075000,
chr21:37700000-37725000~~chr21:38100000-38125000,
chr21:37700000-37725000~~chr21:38125000-38150000,
chr21:37700000-37725000~~chr21:38150000-38175000,
chr21:37700000-37725000~~chr21:38325000-38350000,
chr21:37700000-37725000~~chr21:38350000-38375000,
chr21:37700000-37725000~~chr21:39125000-39150000,
chr21:37700000-37725000~~chr21:39150000-39175000,
chr21:37700002-37701549~~chr21:38355168-38357094,
chr21:37700007-37701742~~chr21:38126169-38127633,
chr21:37700028-37701831~~chr21:38125971-38127690,
chr21:37700051-37701798~~chr21:38351792-38353520,
chr21:37700051-37701798~~chr21:38355384-38357279,
chr21:37700066-37701913~~chr21:38126191-38127689,
chr21:37700073-37701763~~chr21:38126208-38127589,
chr21:37700099-37701668~~chr21:38126009-38127720,
chr21:37700112-37701685~~chr21:38125778-38127688,
chr21:37700112-37701685~~chr21:38351781-38353572,
chr21:37700162-37701530~~chr21:38126218-38127536,