- Basic information
- CohesinDB ID: CDBP00418974
- Locus: chr21-37709173-37709675
-
Data sourse: GSE206145, GSE67783, GSE68388
-
Cell type: RPE, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
95% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 51%,
"14_ReprPCWk": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, TRIM25, ZSCAN5C, SOX2, MEIS2, XBP1, PATZ1, FOXA1, HLF, SUZ12, PBX2, ZFHX2, TFAP4, HNRNPK, ZNF90, ATF3, HNRNPUL1, CTCFL, CHD7, PRDM1, RUNX3, ZNF444, ZNF189, MITF, ZNF467, MYOG, ZNF629, JMJD1C, TEAD1, TRIM28, BCLAF1, RBM39, NFE2L2, KLF10, ZNF624, ESR1, PITX3, ZNF561, ZFP91, CTCF, JUN, TCF12, EP300, BAF155, KLF1, MNT, DPF2, E2F6, TRIM24, RFX5, IRF4, DEK, PBX3, E2F1, SMC1, ZNF280A, TEAD4, FOXA3, GTF2F1, PDX1, TFAP2C, EED, GLIS1, NANOG, CHD8, POU2F2, ZSCAN5D, BRD3, MYCN, ZNF263, POU5F1, RUNX1T1, ZBTB17, ZBTB48, ZSCAN5A, STAT1, SRF, ERG2, ARID3A, SP4, TBP, HNF4G, ERG, PBX1, ASCL1, ZBTB8A, ETS1, MYC, NFKB2, SMARCA4, TSHZ1, RFX1, RAD21, FOXP2, GRHL3, RXRA, PROX1, STAT3, XRCC5, NKX3-1, CREM, ZNF398, NFE2, RCOR1, NR2F6, MIER3, NR3C1, ESRRA, CEBPB, KMT2A, CREB1, FOXK1, CCAR2, EZH2, JMJD6, FEZF1, EBF3, SPI1, IRF1, PCBP1, HDAC2, GATA2, SIX2, FLI1, HCFC1, NR2C2, MXI1, SMARCA5, MRTFB, MYF5, ETV5, CC2D1A, RUNX1, MAFG, BCL6, SMC1A, NKX2-2, EZH2phosphoT487, LDB1, AFF4, ZFX, ZNF534, SIN3A, SMAD3, PCBP2, TET2, CBX8, ERG3, ZNF654, NFXL1, TRIM22, TWIST1, SMARCC1, CREBBP, NFYC, ZNF35, ZBTB2, ZNF384, RUNX2, CDK6, GATA4, OSR2, ZNF184, DAXX, BACH1, NRF1, PBX4, SOX11, ZBTB10, ARNT, ZEB2, ZNF518A, ATF2, CBFA2T3, PRDM9, FOXJ2, MAFB, CDK8, CHD1, NFYA, HMGXB4, MED1, FOS, ZXDB, PIAS1, SMAD1, C11orf30, TBX5, STAT5A, KLF16, MAFK, SP1, USF1, BCL11A, HNF4A, NR4A1, CBX3, IKZF5, REST, OVOL3, RBM25, POU2F3, ZHX1, ASH2L, PHIP, TCF3, FOXP1, PRDM6, SMC3, ELL2, STAG1, STAG2, NFATC3, SKI, TRP47, MEF2B, PPARG, TBL1X, FOXA2, EBF1, CHD2, SS18, MEIS1, ZNF600, ZNF692, ZSCAN16, MAFF, WT1, GTF2B, FOXF1, ZNF574, CDK9, HOXB13, KDM1A, YY1, RELA, NEUROD1, AHR, ISL1, SP140, ZIC2, HIF1A, ZFP36, GATA3, BATF, MAX, NRIP1, ZNF143, HAND2, TLE3, ZFP69B, KLF4, SP7, GFI1B, NR2F2, ZNF512, NR2F1, NEUROG2, KDM5B, TP53, PKNOX1, NFKB1, MYOD1, EGR2, PHOX2B, BRD2, BHLHE40, AR, PAX3-FOXO1, EGLN2, ZBTB42, ZNF366, RB1, HSF1, RNF2, NOTCH3, BRD4, JUND, ZBTB26, CLOCK, ILF3, MAZ, TBX2, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): PSMG1,KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157542,
ENSG00000183527,
- Related loop:
chr21:37165903-37167741~~chr21:37711396-37713035,
chr21:37700000-37725000~~chr21:37825000-37850000,
chr21:37700000-37725000~~chr21:37875000-37900000,
chr21:37700000-37725000~~chr21:37900000-37925000,
chr21:37700000-37725000~~chr21:37925000-37950000,
chr21:37700000-37725000~~chr21:37950000-37975000,
chr21:37700000-37725000~~chr21:38050000-38075000,
chr21:37700000-37725000~~chr21:38100000-38125000,
chr21:37700000-37725000~~chr21:38125000-38150000,
chr21:37700000-37725000~~chr21:38150000-38175000,
chr21:37700000-37725000~~chr21:38325000-38350000,
chr21:37700000-37725000~~chr21:38350000-38375000,
chr21:37700000-37725000~~chr21:39125000-39150000,
chr21:37700000-37725000~~chr21:39150000-39175000,
chr21:37710058-37714050~~chr21:37769665-37771313,
chr21:37710058-37714050~~chr21:37915593-37917649,
chr21:37710058-37714050~~chr21:37917683-37919463,
chr21:37710058-37714050~~chr21:38139516-38141430,
chr21:37710487-37712977~~chr21:37915309-37917693,
chr21:37710487-37712977~~chr21:38125804-38127970,
chr21:37710487-37712977~~chr21:38355104-38357300,
chr21:37710499-37712987~~chr21:38125763-38127934,
chr21:37710638-37713716~~chr21:37914870-37917976,
chr21:37710638-37713716~~chr21:38125790-38127981,
chr21:37710736-37713758~~chr21:37914851-37917797,
chr21:37710736-37713758~~chr21:38125761-38128067,
chr21:37710736-37713758~~chr21:38169391-38172834,
chr21:37710736-37713758~~chr21:38355287-38357113,
chr21:37711372-37713046~~chr21:37915606-37917528,
chr21:37711372-37713046~~chr21:38125725-38127860,
chr21:37711375-37712997~~chr21:38217749-38220501,
chr21:37711375-37712997~~chr21:38355275-38357287,
chr21:37711392-37713025~~chr21:38125767-38127866,
chr21:37711392-37713166~~chr21:37915411-37917551,
chr21:37711392-37713166~~chr21:38125754-38127987,
chr21:37711394-37712982~~chr21:37915529-37918394,
chr21:37711394-37712982~~chr21:38125749-38127915,
chr21:37711394-37712982~~chr21:38351543-38353716,
chr21:37711394-37712982~~chr21:38355432-38357106,
chr21:37711395-37713012~~chr21:37914884-37917576,
chr21:37711395-37713012~~chr21:38125801-38127928,
chr21:37711395-37713012~~chr21:38355322-38357346,
chr21:37711396-37712996~~chr21:38125971-38127690,
chr21:37711396-37712996~~chr21:38355129-38357200,
chr21:37711396-37713035~~chr21:37915225-37917656,
chr21:37711397-37713457~~chr21:37915637-37917611,
chr21:37711397-37713457~~chr21:38125740-38127873,
chr21:37711397-37713457~~chr21:38355442-38357264,
chr21:37711406-37712950~~chr21:38125771-38127931,
chr21:37711406-37712996~~chr21:38351825-38353553,
chr21:37711406-37712996~~chr21:38355277-38357273,
chr21:37711408-37712950~~chr21:38125778-38127949,
chr21:37711418-37712993~~chr21:37915255-37918377,
chr21:37711418-37712993~~chr21:38125791-38127926,
chr21:37711434-37712961~~chr21:38126151-38127594,
chr21:37711434-37712993~~chr21:38125779-38127911,
chr21:37711438-37713000~~chr21:38125779-38127948,
chr21:37711438-37713000~~chr21:38351755-38353771,
chr21:37711438-37713000~~chr21:38355274-38357174,
chr21:37711441-37713006~~chr21:38125941-38127948,
chr21:37711441-37713006~~chr21:38355373-38357156,
chr21:37711442-37712977~~chr21:38126150-38127604,
chr21:37711445-37712965~~chr21:37915589-37917624,
chr21:37711445-37712965~~chr21:38125778-38127688,
chr21:37711446-37713025~~chr21:38125798-38127942,
chr21:37711455-37712980~~chr21:38125790-38127976,
chr21:37711455-37712980~~chr21:38351797-38353501,
chr21:37711455-37712980~~chr21:38355282-38357170,
chr21:37711458-37712951~~chr21:38355303-38357092,
chr21:37711462-37712982~~chr21:37915731-37917102,
chr21:37711462-37712982~~chr21:38126125-38127630,
chr21:37711462-37712982~~chr21:38355333-38356894,
chr21:37711467-37712985~~chr21:38125934-38127923,
chr21:37711467-37712985~~chr21:38355325-38357124,
chr21:37711477-37713059~~chr21:38351760-38353699,
chr21:37711511-37712978~~chr21:38351792-38353520,
chr21:37711568-37712969~~chr21:37915343-37917688,
chr21:37711568-37712969~~chr21:38355272-38357307,
chr21:37711574-37712971~~chr21:38126041-38127628,
chr21:37711651-37712969~~chr21:38126216-38127622,
chr21:37711651-37712969~~chr21:38355362-38356894,
chr21:37711676-37712970~~chr21:38355460-38356861,