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Basic information

CohesinDB ID: CDBP00418978

Locus: chr21-37718834-37719293

Data sourse: GSE206145, GSE86191

Cell type: RPE, HCT-116

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 95% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 50%, "14_ReprPCWk": 43%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CHD8, ZSCAN5D, MYCN, FOXA2, SOX2, ZFX, ZBTB48, WT1, ZSCAN5A, YY1, RELA, ATF3, SP140, NCOA3, NR2F1, LMO2, ESR1, MYOD1, CTCF, AR, IRF4, NOTCH3, MAZ, SMC3

Target gene symbol (double-evidenced CRMs): KCNJ6,PSMG1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 8

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000157542, ENSG00000183527,

eachgene

Deatailed information for cohesin site CDBP00418978