Browse_each

Basic information

CohesinDB ID: CDBP00418980

Locus: chr21-37729837-37730152

Data sourse: GSE116344, GSE67783

Cell type: RH4, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 95% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 46%, "14_ReprPCWk": 44%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CHD8, ZFX, EZH2, ZBTB17, NOTCH3, ZSCAN5A, NCOA2, CTCF, TCF12, CHD1

Target gene symbol (double-evidenced CRMs): KCNJ6,KCNJ15,ERG

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000157542, ENSG00000157551, ENSG00000157554,

eachgene

Deatailed information for cohesin site CDBP00418980