Browse_each

Basic information

CohesinDB ID: CDBP00418982

Locus: chr21-37735375-37735832

Data sourse: GSE206145, GSE67783, GSE86191

Cell type: RPE, HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 95% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 43%, "14_ReprPCWk": 41%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ZNF816, TBL1X, MYCN, ZFX, WT1, ZSCAN5A, ZBTB48, RELA, AHR, EZH1, SP140, ARNT, GRHL3, HIF1A, EZH2, C11orf30, MYOD1, CTCF, NOTCH3, TCF3, MAZ, SMC3, STAG1, TFAP2C

Target gene symbol (double-evidenced CRMs): KCNJ15,KCNJ6,ERG

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000157542, ENSG00000157551, ENSG00000157554,

eachgene

Deatailed information for cohesin site CDBP00418982