Browse_each

Basic information

CohesinDB ID: CDBP00418983

Locus: chr21-37742634-37743029

Data sourse: GSE206145-NatGen2015

Cell type: Fibroblast

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Mau2,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 95% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 47%, "14_ReprPCWk": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PGR, MEF2B, FOXA2, MYCN, NKX2-2, ZNF263, ZFX, WT1, SMAD3, FOXF1, FOXA1, CDK9, HOXB13, RELA, PBX1, ASCL1, MYC, RUNX2, GATA3, GABPA, TAL1, MAX, GATA1, IKZF1, ZNF143, MED1, NR3C1, NCOA3, TEAD1, KMT2A, ETV1, NEUROG2, KDM5B, LMO2, ESR1, CTCF, MNT, AR, GATA2, YAP1, IRF4, BRD4, TCF3, FOXP1, SMC3, AHR, EED

Target gene symbol (double-evidenced CRMs): KCNJ15,ERG,KCNJ6

Function elements

Human SNPs: .

Number of somatic mutations (coding): 8

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000157542, ENSG00000157551, ENSG00000157554,

eachgene

Deatailed information for cohesin site CDBP00418983