- Basic information
- CohesinDB ID: CDBP00418995
- Locus: chr21-37782952-37783373
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Data sourse: GSE206145-NatGen2015
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Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 56%,
"9_Het": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, SMC1A, CHD8, FOXA2, ZSCAN5D, TOP2A, ZFX, SMAD3, ESR2, FOXA1, ZNF300, ERG, KDM1A, RUNX2, GRHL3, OTX2, MAX, TP63, FOS, ZNF143, RCOR1, MED1, NCOA3, TRIM28, CREB1, TP53, ESR1, MYOD1, CTCF, JUN, BRD2, AR, ZNF257, REST, RBM25, ZNF280D, FLI1, BRD4, MYF5, PDX1
- Target gene symbol (double-evidenced CRMs): KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops