- Basic information
- CohesinDB ID: CDBP00418999
- Locus: chr21-37793624-37793929
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Data sourse: ENCSR000EFJ, GSE206145-NatGen2015, GSE206145
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Cell type: RPE, Fibroblast, IMR-90
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 69%,
"14_ReprPCWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX7, CHD8, LDB1, ZFX, DUX4, SMAD3, STAT1, FOXA1, SRF, ERG3, ERG2, ZFHX2, ERG, RELA, ZNF384, RUNX2, GABPA, TAL1, MAX, STAT3, ZNF143, GFI1, CDK8, FOS, GATA1, MED1, RCOR1, CEBPB, MYB, KMT2A, ZMYM3, EZH2, MYOD1, EGR2, CTCF, JUN, SPI1, BCL11A, ZNF664, LMO1, GATA6, RBM25, IRF4, RNF2, BRD4, BCOR, ZIM3, PDX1, RBPJ
- Target gene symbol (double-evidenced CRMs): KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops