- Basic information
- CohesinDB ID: CDBP00419007
- Locus: chr21-37821953-37822520
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Data sourse: GSE67783, GSE68388
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Cell type: HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 56%,
"14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, FOXA2, ZNF263, MYCN, ZFX, XBP1, SMAD3, RELA, ASCL1, JUNB, MYC, RUNX2, PBX4, HIF1A, STAT3, MAX, FOS, RCOR1, ZNF750, TRIM28, SNAI2, EZH2, STAG1, MYOD1, CTCF, MAFK, MNT, AR, BRD4, MAZ, SMC3, PDX1
- Target gene symbol (double-evidenced CRMs): ERG,KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops