- Basic information
- CohesinDB ID: CDBP00419009
- Locus: chr21-37827940-37830200
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Data sourse: ENCSR853VWZ, ENCSR230ZWH, GSE67783, GSE86191, GSE111913, GSE206145, GSE206145-NatGen2015, GSE55407, ENCSR247LSH, GSE120943, GSE68388, ENCSR495WGO, GSE126755, ENCSR917QNE
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Cell type: RPE, Fibroblast, HCT-116, Monocytes, THP-1, A-549, RT-112, Liver, Neutrophil, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 36%,
"7_Enh": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, XBP1, FOXA1, SUZ12, ZNF28, ZFHX2, MLL4, TFAP4, ZNF90, ATF3, CHD7, MECOM, TP63, CDX2, JMJD1C, TRIM28, SNAI2, LMO2, ESR1, CTCF, TCF12, JUN, LMO1, GATA6, DPF2, TRIM24, E2F1, KMT2B, FOXA3, PDX1, TFAP2C, RBPJ, GLIS1, ZSCAN5D, MYCN, ZNF263, POU5F1, RUNX1T1, CDK7, ZBTB48, ZSCAN5A, STAT1, DDX5, ERG2, HNF4G, ERG, PAX6, ZNF300, PBX1, ASCL1, ETS1, MYC, SMARCA4, RAD21, GRHL3, RXRA, PROX1, NKX2-1, BATF3, GABPA, STAT3, XRCC5, NKX3-1, IKZF1, RCOR1, GFI1, VDR, NR3C1, CEBPB, KMT2A, EZH2, GRHL2, GABPB1, ZHX2, SPI1, KLF17, GATA2, ZNF644, GATAD2B, SIX2, FLI1, MYF5, PTBP1, RUNX1, CEBPA, NKX2-2, SIN3A, ZFX, SMAD3, ERG3, SP5, RARA, CREBBP, NOTCH1, RUNX2, GATA4, PBX4, ARNT, ATF2, ZNF48, MAFB, FOS, CDK8, MED1, ZEB1, TEAD3, MYB, NR1H2, SETDB1, SP1, BCL11A, HNF4A, TCF3, AATF, SMC3, STAG1, SKI, TRP47, MEF2B, PPARG, FOXA2, EBF1, ZSCAN16, WT1, FOXF1, MEF2C, KDM1A, YY1, RELA, NEUROD1, JUNB, SP140, ZFP36, HIF1A, GATA3, TAL1, MAX, SPIB, ZNF143, BCL11B, NCOA3, NEUROG2, TP53, MED, ZNF334, MYOD1, EGR2, BRD2, BHLHE40, AR, ZBTB42, HSF1, NCOR1, NOTCH3, BRD4, ZBTB26, JUND, CUX1, MAZ, FOSL2
- Target gene symbol (double-evidenced CRMs): KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 18
- Number of somatic mutations (non-coding): 0
- Related genes and loops