- Basic information
- CohesinDB ID: CDBP00419013
- Locus: chr21-37845260-37846600
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Data sourse: GSE206145-GSE177045, ENCSR230ZWH, GSE98367, GSE206145, GSE206145-NatGen2015, GSE120943, ENCSR917QNE
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Cell type: MCF-7, RPE, Fibroblast, Monocytes, Liver, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: Mau2,Rad21,SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 47%,
"14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, ZNF496, NME2, FOXA1, ZFHX2, ATF3, ZNF112, ZSCAN4, HDAC3, LMO2, ESR1, CTCF, BAF155, E2F6, PDX1, TFAP2C, RBPJ, GLIS1, NANOG, POU5F1, DDX5, ERG2, HNF4G, ERG, ASCL1, ONECUT1, MYC, SMARCA4, RAD21, RXRA, GABPA, STAT3, NKX3-1, ZNF398, NR3C1, ESRRA, CEBPB, CREB1, EZH2, GRHL2, HDAC2, GATA2, SIX2, CEBPA, NKX2-2, ZFX, SMAD3, ERG3, CREBBP, NOTCH1, GATA4, MAFB, FOS, MED1, PIAS1, TBX5, SP1, TFAP2A, HNF4A, REST, OVOL3, ASH2L, FOXP1, SMC3, MEF2B, FOXA2, EBF1, ZNF692, ZBTB33, YY2, HOXB13, YY1, RELA, ZNF148, MCM3, GATA3, MAX, ZSCAN26, HAND2, TLE3, ZFP69B, NR2F2, TCF7L2, NEUROG2, ZNF791, TP53, MYOD1, EGR2, AR, EGR1, BRD4, JUND
- Target gene symbol (double-evidenced CRMs): KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 20
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157542,
- Related loop:
chr21:36975000-37000000~~chr21:37850000-37875000,
chr21:37250000-37275000~~chr21:37850000-37875000,
chr21:37700000-37725000~~chr21:37825000-37850000,
chr21:37825000-37850000~~chr21:37950000-37975000,
chr21:37825000-37850000~~chr21:38050000-38075000,
chr21:37850000-37875000~~chr21:37950000-37975000,
chr21:37850000-37875000~~chr21:38325000-38350000,
chr21:37850000-37875000~~chr21:38775000-38800000,
chr21:37850000-37875000~~chr21:38800000-38825000,
chr21:37850000-37875000~~chr21:39175000-39200000,