Deatailed information for cohesin site CDBP00419018
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- Basic information
- CohesinDB ID: CDBP00419018
- Locus: chr21-37858133-37858424
- Data sourse: GSE206145-NatGen2015, GSE67783
- Cell type: Fibroblast, HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 77%,
"14_ReprPCWk": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: ZNF283, C11orf30, SETDB1, CTCF, SPI1, ZNF316
- Target gene symbol (double-evidenced CRMs): KCNJ6,HLCS,VPS26C,PSMG1,BRWD1,ETS2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene: ENSG00000159267, ENSG00000157538, ENSG00000157542, ENSG00000157557, ENSG00000183527, ENSG00000185658,
- Related loop: chr21:36975000-37000000~~chr21:37850000-37875000, chr21:37250000-37275000~~chr21:37850000-37875000, chr21:37850000-37875000~~chr21:37950000-37975000, chr21:37850000-37875000~~chr21:38325000-38350000, chr21:37850000-37875000~~chr21:38775000-38800000, chr21:37850000-37875000~~chr21:38800000-38825000, chr21:37850000-37875000~~chr21:39175000-39200000,
Tools:
- Assay
