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Basic information

CohesinDB ID: CDBP00419036

Locus: chr21-37904870-37905118

Data sourse: GSE206145-NatGen2015, GSE86191, ENCSR917QNE

Cell type: Liver, Fibroblast, HCT-116

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: Rad21,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 68% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "14_ReprPCWk": 51%, "15_Quies": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CHD8, BCL6, FOXA2, NKX2-2, MYCN, POU5F1, ZNF263, ZFX, XBP1, WT1, FOXA1, ZNF205, YY1, RELA, RUNX2, MYC, PRDM1, ARNT, HIF1A, PAX5, MAFB, NKX3-1, MAX, ZNF143, CREB1, RBM39, PIAS1, EZH2, CTCF, ELF4, ZBTB40, GATA2, E2F1, PDX1

Target gene symbol (double-evidenced CRMs): VPS26C,TTC3,DYRK1A,HLCS,KCNJ6

Function elements

Human SNPs: .

Number of somatic mutations (coding): 8

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000159267, ENSG00000182670, ENSG00000157538, ENSG00000157540, ENSG00000157542,

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Deatailed information for cohesin site CDBP00419036