- Basic information
- CohesinDB ID: CDBP00419037
- Locus: chr21-37909356-37909603
-
Data sourse: GSE206145-GSE177045, GSE67783
-
Cell type: MCF-7, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"14_ReprPCWk": 65%,
"15_Quies": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RELA, CEBPA, SCRT2, ZFX, RAD21, ZBTB26, ESR1, SCRT1, TAL1, HIF1A, CLOCK, GABPA, SRF, ZNF823, SMC3, CTCF, ZBTB33, ZNF143, STAG1
- Target gene symbol (double-evidenced CRMs): TTC3,DYRK1A,VPS26C,KCNJ6,HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159267,
ENSG00000182670,
ENSG00000157538,
ENSG00000157540,
ENSG00000157542,
- Related loop:
chr21:36975000-37000000~~chr21:37900000-37925000,
chr21:37150000-37175000~~chr21:37900000-37925000,
chr21:37225000-37250000~~chr21:37900000-37925000,
chr21:37350000-37375000~~chr21:37900000-37925000,
chr21:37700000-37725000~~chr21:37900000-37925000,
chr21:37725000-37750000~~chr21:37900000-37925000,
chr21:37750000-37775000~~chr21:37900000-37925000,
chr21:37775000-37800000~~chr21:37900000-37925000,
chr21:37800000-37825000~~chr21:37900000-37925000,
chr21:37900000-37925000~~chr21:38125000-38150000,
chr21:37900000-37925000~~chr21:38150000-38175000,
chr21:37900000-37925000~~chr21:38325000-38350000,
chr21:37900000-37925000~~chr21:38350000-38375000,