- Basic information
- CohesinDB ID: CDBP00419044
- Locus: chr21-37943352-37943708
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Data sourse: GSE206145, GSE116344, GSE206145-NatGen2015, GSE67783
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Cell type: RPE, Fibroblast, RH4, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 67%,
"14_ReprPCWk": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, CHD8, ZSCAN5D, EZH2phosphoT487, EBF1, MYCN, SOX2, ZFX, ZBTB48, WT1, RELA, ASCL1, BMI1, MYC, RFX1, CHD7, ARNT, SOX11, STAT3, MAX, SMARCE1, ZNF143, MED1, NCOA3, EZH2, MYOD1, CTCF, POU2F1, BCL11A, EP300, GSPT2, REST, POU2F3, NOTCH3, BRD4, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): ERG,KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops