- Basic information
- CohesinDB ID: CDBP00419048
- Locus: chr21-37952299-37952784
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Data sourse: GSE206145, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC, RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 47%,
"14_ReprPCWk": 43%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TBL1X, MYCN, POU5F1, KDM4C, ZFX, XBP1, WT1, ZBTB48, TET2, YY1, RELA, ATF3, MYC, SP140, ARNT, MAX, SUPT5H, HNRNPH1, CREB1, EZH2, LMO2, ZNF3, JUN, CTCF, USF1, AR, HDAC2, BRD4, MAZ, SMC3, GTF2F1, STAG1
- Target gene symbol (double-evidenced CRMs): KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 5
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157542,
- Related loop:
chr21:37700000-37725000~~chr21:37925000-37950000,
chr21:37700000-37725000~~chr21:37950000-37975000,
chr21:37725000-37750000~~chr21:37950000-37975000,
chr21:37825000-37850000~~chr21:37950000-37975000,
chr21:37850000-37875000~~chr21:37950000-37975000,
chr21:37925000-37950000~~chr21:38025000-38050000,
chr21:37925000-37950000~~chr21:38350000-38375000,
chr21:37925000-37950000~~chr21:38525000-38550000,
chr21:37950000-37975000~~chr21:38050000-38075000,
chr21:37950000-37975000~~chr21:38075000-38100000,
chr21:37950000-37975000~~chr21:38125000-38150000,