- Basic information
- CohesinDB ID: CDBP00419056
- Locus: chr21-37973965-37974473
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Data sourse: GSE138405, ENCSR193NSH, ENCSR150EFU, GSE68388, GSE165895
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Cell type: Hela-Kyoto, A-549, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SMC3,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 53%,
"15_Quies": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, POU2F2, CHD8, POU5F1, MYCN, NME2, ZFX, SMAD3, ESR2, DDX5, ZFHX2, RELA, JUNB, RUNX2, CDK6, SMARCA4, PBX4, DAXX, ARNT, NKX2-1, GATA3, STAT3, MAX, FOS, MITF, NR3C1, CEBPB, TEAD1, ELF1, NEUROG2, KDM5B, ESR1, HNF1B, TP53, NFKB1, JUN, ZHX2, TCF12, EP300, SP1, BHLHE40, AR, ARID1A, E2F6, NOTCH3, BRD4, TEAD4, STAG1, FOSL2
- Target gene symbol (double-evidenced CRMs): KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops