- Basic information
- CohesinDB ID: CDBP00419058
- Locus: chr21-37981356-37981676
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE67783, GSE86191
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Cell type: RPE, Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 55%,
"15_Quies": 43%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, CBX1, ZNF316, HDAC1, ZNF263, EZH2phosphoT487, TOP2A, ZNF207, CHD8, XBP1, ZNF317, DUX4, ZBTB48, SMAD3, FOXA1, PCBP2, ZNF662, SUZ12, ERG, HNRNPK, RELA, ZNF384, OGG1, MYC, CDK6, PRDM1, GRHL3, HIF1A, GATA3, GABPA, TAL1, GATA1, IKZF1, FOS, SUPT5H, NR3C1, NCOA3, CREB1, PIAS1, ZNF512, EZH2, LMO2, ESR1, KDM5B, C11orf30, MAFK, SPI1, AR, DPF2, PCBP1, GATA2, ZNF366, POU2F3, FOSL2, HSF1, FLI1, BRD4, FOXP1, HCFC1R1, ZNF175, AHR, EED
- Target gene symbol (double-evidenced CRMs): KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops