- Basic information
- CohesinDB ID: CDBP00419059
- Locus: chr21-37983513-37984821
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Data sourse: ENCSR501LQA, ENCSR150EFU, ENCSR330ELC, GSE165895, GSE138405, ENCSR895JMI, ENCSR193NSH, ENCSR768DOX, ENCSR981FDC, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, ENCSR495WGO, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR676MJK, ENCSR335RKQ, ENCSR537EFT, GSE68388, GSE126990, ENCSR748MVX
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Cell type: Hela-Kyoto, A-549, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 44%,
"15_Quies": 44%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, CHD8, FOXA2, SOX2, AFF4, SS18, TEAD4, SMAD3, ESR2, FOXA1, BCL3, ERG, RELA, CREBBP, JUNB, ETS1, RUNX2, SMARCA4, CHD7, RAD21, PBX4, DAXX, GATA3, GABPA, STAT3, MAX, FOS, MED1, NR3C1, CEBPB, ZNF750, TEAD1, NR2F2, CREB1, EZH2, TP53, ESR1, NFKB1, BRD2, ZHX2, TCF12, SP1, EP300, JUN, BAF155, AR, SOX4, GATA2, REST, BRD4, JUND, SMC3, FOSL2
- Target gene symbol (double-evidenced CRMs): KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops