- Basic information
- CohesinDB ID: CDBP00419072
- Locus: chr21-38042171-38042741
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Data sourse: ENCSR895JMI, ENCSR853VWZ, ENCSR956LGB, ENCSR193NSH, ENCSR150EFU, ENCSR335RKQ, ENCSR537EFT, ENCSR247LSH, ENCSR981FDC, ENCSR153HNT, ENCSR620NWG, GSE68388, ENCSR495WGO
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Cell type: K-562, A-549, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,Rad21,SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 58%,
"14_ReprPCWk": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, FOXA2, AFF4, HNF1A, FOXA1, PRDM1, GRHL3, GATA3, GABPA, MAX, FOS, ZNF143, MED1, NR3C1, CEBPB, TEAD1, CREB1, EZH2, ESR1, HNF1B, TCF12, MAFK, EP300, NIPBL, SP1, USF1, AR, REST, HSF1, JUND, PDX1, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops