- Basic information
- CohesinDB ID: CDBP00419074
- Locus: chr21-38059512-38059763
-
Data sourse: GSE120943, ENCSR153HNT
-
Cell type: K-562, Monocytes
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 56%,
"14_ReprPCWk": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZNF263, TOP2A, ZFX, XBP1, ZBTB17, WT1, ZBTB48, RELA, ZNF384, GRHL3, SP2, ZNF143, SUPT5H, CDC5L, NCOA3, CREB1, ESR1, ZNF334, NFKB1, JUN, CTCF, ZBTB40, POU2F3, BRD4, CLOCK, MAZ, STAG1
- Target gene symbol (double-evidenced CRMs): KCNJ6,ERG
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157542,
ENSG00000157554,
- Related loop:
chr21:37700000-37725000~~chr21:38050000-38075000,
chr21:37725000-37750000~~chr21:38050000-38075000,
chr21:37825000-37850000~~chr21:38050000-38075000,
chr21:37950000-37975000~~chr21:38050000-38075000,
chr21:38050000-38075000~~chr21:38150000-38175000,
chr21:38050000-38075000~~chr21:38325000-38350000,
chr21:38050000-38075000~~chr21:38350000-38375000,
chr21:38050000-38075000~~chr21:38375000-38400000,
chr21:38050000-38075000~~chr21:38575000-38600000,
chr21:38050000-38075000~~chr21:38650000-38675000,
chr21:38050000-38075000~~chr21:38675000-38700000,