- Basic information
- CohesinDB ID: CDBP00419078
- Locus: chr21-38078126-38079068
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Data sourse: GSE67783, ENCSR193NSH, GSE138405, GSE206145-NatGen2015, ENCSR000EDE, GSE68388, GSE126990, ENCSR330ELC, ENCSR000ECS
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Cell type: Fibroblast, Hela-Kyoto, A-549, HeLa-S3, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 71%,
"14_ReprPCWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, CHD8, CEBPA, MYCN, POU5F1, EZH2phosphoT487, FOXA2, ZFX, SMAD3, ZSCAN5A, HLF, ZBTB33, HOXB13, RELA, ATF3, RAD21, NRF1, PBX4, HIF1A, MAX, TP63, ZSCAN4, FOS, MED1, PLAG1, VDR, CEBPG, CEBPB, NR3C1, NR2F2, TRIM28, CEBPD, TEAD1, TCF7L2, EZH2, ESR1, ZNF334, USF2, JUN, ZHX2, EP300, AR, GATA2, ZNF410, BRD4, JUND, NFIL3, SMC3
- Target gene symbol (double-evidenced CRMs): KCNJ6,DYRK1A,ERG
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157540,
ENSG00000157542,
ENSG00000157554,
- Related loop:
chr21:33825000-33850000~~chr21:38075000-38100000,
chr21:37525000-37550000~~chr21:38075000-38100000,
chr21:37700000-37725000~~chr21:38050000-38075000,
chr21:37725000-37750000~~chr21:38050000-38075000,
chr21:37725000-37750000~~chr21:38075000-38100000,
chr21:37825000-37850000~~chr21:38050000-38075000,
chr21:37950000-37975000~~chr21:38050000-38075000,
chr21:37950000-37975000~~chr21:38075000-38100000,
chr21:38050000-38075000~~chr21:38150000-38175000,
chr21:38050000-38075000~~chr21:38325000-38350000,
chr21:38050000-38075000~~chr21:38350000-38375000,
chr21:38050000-38075000~~chr21:38375000-38400000,
chr21:38050000-38075000~~chr21:38575000-38600000,
chr21:38050000-38075000~~chr21:38650000-38675000,
chr21:38050000-38075000~~chr21:38675000-38700000,
chr21:38075000-38100000~~chr21:38525000-38550000,
chr21:38075000-38100000~~chr21:38700000-38725000,