- Basic information
- CohesinDB ID: CDBP00419079
- Locus: chr21-38080896-38081400
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Data sourse: GSE86191, ENCSR198ZYJ, ENCSR153HNT, ENCSR404BPV
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Cell type: K-562, Neurons-H1, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 65%,
"14_ReprPCWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PGR, NANOG, FOXA2, POU5F1, ZSCAN5D, ZNF263, ID3, ZFX, XBP1, WT1, ZSCAN5A, FOXA1, SUZ12, TBP, ERG, RELA, HDGF, MYC, SMARCA4, ARID1B, GABPA, CBFA2T3, NKX3-1, SUPT5H, GATA1, RCOR1, ZNF143, HDAC3, TLE3, NR3C1, NR2F2, CEBPD, PIAS1, EZH2, ESR1, PKNOX1, CTCF, EP300, BAF155, AR, HDAC2, GATA2, ARID1A, E2F4, ASH2L, ZNF605, MXI1, ZNF528, MAZ, TEAD4, AHR, EED
- Target gene symbol (double-evidenced CRMs): ERG,DYRK1A,KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 0
- Related genes and loops