- Basic information
- CohesinDB ID: CDBP00419080
- Locus: chr21-38083087-38083355
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Data sourse: GSE138405, GSE126990, GSE68388
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Cell type: Hela-Kyoto, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 63%,
"14_ReprPCWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CEBPA, FOXA2, MEIS1, TOP2A, ZFX, DUX4, FOXA1, MEF2C, ERG3, MLL4, SMARCC1, PRDM10, RELA, CREBBP, OGG1, CDK6, SMARCA4, PBX4, ARNT, STAT3, GATA1, VDR, NR3C1, CEBPB, ESR1, TP53, OCA2, NFKB1, CTCF, SPI1, AR, POU2F3, HSF1, BRD4, SMC3, TFAP2C
- Target gene symbol (double-evidenced CRMs): ERG,DYRK1A,KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops