- Basic information
- CohesinDB ID: CDBP00419081
- Locus: chr21-38089024-38089496
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Data sourse: ENCSR879KXD, ENCSR000BKV
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Cell type: K-562
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 55%,
"14_ReprPCWk": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, HMGN3, MEIS2, NME2, PBX2, UBTF, HDGF, NFIC, SMARCE1, MITF, HDAC3, ELF1, TRIM28, NFE2L2, ESR1, CTCF, TCF12, EP300, E4F1, KLF1, MNT, GATA6, DPF2, E2F6, TRIM24, SOX6, CREB3, DDX20, TEAD4, ZNF175, GATAD2A, EHMT2, CHD8, TOP2A, ID3, CTBP1, MTA2, DUX4, NBN, ARID3A, TBP, MIER1, SMARCC2, MYC, SMARCA4, ARID1B, FOXK2, IKZF1, RCOR1, LEF1, NR2F6, NFRKB, ZNF639, NFE2, NR3C1, CEBPB, ZBTB11, EZH2, TBL1XR1, GABPB1, ELF4, SPI1, HDAC2, GATA2, ZNF644, ZSCAN29, SMARCA5, ATF1, CC2D1A, MAFG, HDAC1, LDB1, ZFX, ZMIZ1, PRDM10, MEF2A, ZBTB2, ZNF384, IRF2, BRD9, ARNT, NRF1, ATF2, ZEB2, HMBOX1, NFYA, FOXM1, CBFA2T3, SMARCB1, SUPT5H, MED1, GMEB1, PML, CEBPD, C11orf30, L3MBTL2, NCOA1, STAT5A, KLF16, NR4A1, REST, ZBTB7A, CCNT2, ATF7, ZHX1, BCOR, MBD2, STAT2, MLLT1, NFATC3, CBFA2T2, CBX3, MTA3, RBBP5, CREM, HOXB13, ZKSCAN1, CREB3L1, YY1, KDM1A, NEUROD1, AHR, JUNB, CHAMP1, ZNF830, TAL1, MAX, GATA1, MTA1, ZNF143, ZNF592, GFI1B, NR2F2, NCOA3, ZNF512, NR2F1, PKNOX1, PHOX2B, AR, TAF1, ZBTB40, MYNN, RNF2, NCOR1, NOTCH3, JUND, BRD4, ILF3, MAZ, ZNF24, ZNF316
- Target gene symbol (double-evidenced CRMs): KCNJ6,DYRK1A,ERG
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 4
- Related genes and loops