- Basic information
- CohesinDB ID: CDBP00419083
- Locus: chr21-38095290-38095530
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Data sourse: ENCSR000FAD, GSE68388
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Cell type: K-562, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 50%,
"14_ReprPCWk": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX7, FOSL1, POU2F2, EBF1, MEIS1, MEIS2, CTBP1, XBP1, ZBTB17, SMAD3, PBX2, TFAP4, RELA, CREBBP, JUNB, ATF3, MYC, SMARCA4, ARID1B, MAX, CBFA2T3, SPIB, FOS, NFE2, RCOR1, NCOA3, TEAD1, CTCF, JUN, SPI1, PAX3-FOXO1, DPF2, RXR, IRF4, BRD4, JUND, TEAD4
- Target gene symbol (double-evidenced CRMs): KCNJ6,DYRK1A,ERG
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157540,
ENSG00000157542,
ENSG00000157554,
- Related loop:
chr21:33825000-33850000~~chr21:38075000-38100000,
chr21:37525000-37550000~~chr21:38075000-38100000,
chr21:37700000-37725000~~chr21:38100000-38125000,
chr21:37725000-37750000~~chr21:38075000-38100000,
chr21:37750000-37775000~~chr21:38100000-38125000,
chr21:37950000-37975000~~chr21:38075000-38100000,
chr21:38000000-38025000~~chr21:38100000-38125000,
chr21:38075000-38100000~~chr21:38525000-38550000,
chr21:38075000-38100000~~chr21:38700000-38725000,