- Basic information
- CohesinDB ID: CDBP00419085
- Locus: chr21-38113486-38113867
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Data sourse: GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 51%,
"14_ReprPCWk": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, MEIS2, XBP1, FOXA1, PBX2, UBTF, HDGF, ATF3, ATF4, SMARCE1, TRIM28, NFE2L2, ESR1, HDAC8, JUN, TCF12, EP300, E4F1, MNT, DPF2, E2F6, TRIM24, SOX6, DDX20, E2F1, TEAD4, GATAD2A, EHMT2, EED, POU2F2, POU5F1, TOP2A, ID3, CTBP1, MTA2, ZBTB48, ZSCAN5A, NBN, ARID3A, TBP, MIER1, MYC, SMARCA4, ARID1B, GRHL3, FOXK2, XRCC5, IKZF1, RCOR1, NFRKB, NR3C1, CEBPB, EZH2, TBL1XR1, SPI1, HDAC2, GATA2, ZSCAN29, HCFC1, SMARCA5, NCOA2, MAFG, CEBPA, HDAC1, ZFX, PRDM10, ZBTB2, ZNF384, IRF2, BRD9, ZNF184, ARNT, HMBOX1, ZEB2, CBFA2T3, SUPT5H, PML, CEBPD, TAF7, C11orf30, L3MBTL2, NCOA1, STAT5A, MAFK, BCL11A, NR4A1, REST, ZBTB7A, ATF7, HNRNPLL, AFF1, BCOR, SMC3, MLLT1, STAG1, NFATC3, TRP47, CBFA2T2, CBX3, MTA3, RBBP5, YY1, RELA, AHR, SP140, ZFP36, TAL1, MAX, NRIP1, GATA1, MTA1, ZNF143, CEBPG, ZNF592, GFI1B, NR2F2, NCOA3, NR2F1, KDM5B, PKNOX1, BHLHE40, AR, TAF1, ZBTB40, NCOR1, RNF2, JUND, BRD4, ILF3, CLOCK, NOTCH3, MAZ, IRF9, ZNF24, ZNF316
- Target gene symbol (double-evidenced CRMs): KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops