- Basic information
- CohesinDB ID: CDBP00419086
- Locus: chr21-38114618-38115226
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Data sourse: ENCSR879KXD, GSE68388
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Cell type: K-562, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 53%,
"14_ReprPCWk": 38%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: XBP1, FOXA1, SUZ12, RBFOX2, PBX2, HDGF, ATF3, ZBTB5, PRDM1, SMARCE1, THRAP3, ELF1, MCM7, ESR1, OCA2, HDAC8, CTCF, TCF12, EP300, GATA6, DPF2, TRIM24, CREB3, DDX20, ZNF776, TEAD4, ZNF175, EHMT2, POU2F2, CHD8, NANOG, MYCN, POU5F1, ID3, CTBP1, MTA2, ASH1L, DUX4, BAHD1, NBN, ERG, ZBTB21, MIER1, MYC, SMARCA4, ARID1B, GRHL3, STAT3, XRCC5, IKZF1, RCOR1, DACH1, ZNF639, NR3C1, CEBPB, CREB1, EZH2, ARHGAP35, SPI1, HDAC2, ZNF644, GATAD2B, SMARCA5, ATF1, HDAC1, ZFX, REPIN1, CREBBP, ZBTB2, IRF2, BRD9, ZNF184, ARNT, ATF2, HMBOX1, ZEB2, CBFA2T3, SUPT5H, GMEB1, CEBPD, MYB, SCRT2, SREBF2, BCOR, MLLT1, CBX3, MTA3, WT1, ZNF662, ZNF589, YY1, RELA, AHR, BRCA1, ZNF830, ZIC2, HIF1A, ZNF311, TAL1, NRIP1, GATA1, ZNF143, CEBPG, ZNF592, ZNF83, ZNF544, PKNOX1, T, AR, ZBTB40, BRD4, SCRT1, CLOCK, ZNF24, ZNF316
- Target gene symbol (double-evidenced CRMs): KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops