- Basic information
- CohesinDB ID: CDBP00419090
- Locus: chr21-38124153-38130792
-
Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE36578, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE168045, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, CVI-hiPSC, Liver, GP5d, Transformed-RPE1, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, HUES9, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, SC, A-549, HUVEC, HCAEC, GM19238, HeLa, CNCC-WT33iPSC, BGO3, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 79% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.144
- Subunit: SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"14_ReprPCWk": 44%,
"15_Quies": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CEBPB
- Target gene symbol (double-evidenced CRMs): KCNJ15,HLCS,KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 28
- Related genes and loops
- Related gene:
ENSG00000159267,
ENSG00000157542,
ENSG00000157551,
- Related loop:
chr21:36975000-37000000~~chr21:38125000-38150000,
chr21:37266529-37268622~~chr21:38120549-38122138,
chr21:37674157-37676230~~chr21:38125761-38128067,
chr21:37674162-37676306~~chr21:38125779-38127911,
chr21:37674191-37676998~~chr21:38125778-38127949,
chr21:37674274-37676281~~chr21:38125767-38127866,
chr21:37674327-37676274~~chr21:38125740-38127873,
chr21:37674344-37676262~~chr21:38125763-38127934,
chr21:37674476-37676308~~chr21:38125790-38127976,
chr21:37699607-37702263~~chr21:38125790-38127981,
chr21:37699731-37701840~~chr21:38125767-38127866,
chr21:37699733-37701770~~chr21:38125761-38128067,
chr21:37699764-37701688~~chr21:38125740-38127873,
chr21:37699767-37701789~~chr21:38125763-38127934,
chr21:37699782-37701775~~chr21:38125778-38127949,
chr21:37699800-37701800~~chr21:38125754-38127987,
chr21:37699813-37701825~~chr21:38125771-38127931,
chr21:37699831-37701768~~chr21:38125934-38127923,
chr21:37699842-37701862~~chr21:38125749-38127915,
chr21:37699849-37701736~~chr21:38125958-38127687,
chr21:37699862-37702222~~chr21:38125791-38127926,
chr21:37699932-37701752~~chr21:38126125-38127630,
chr21:37699988-37701699~~chr21:38126068-38127606,
chr21:37699994-37701579~~chr21:38126227-38127525,
chr21:37700000-37725000~~chr21:38100000-38125000,
chr21:37700000-37725000~~chr21:38125000-38150000,
chr21:37700007-37701742~~chr21:38126169-38127633,
chr21:37700028-37701831~~chr21:38125971-38127690,
chr21:37700066-37701913~~chr21:38126191-38127689,
chr21:37700073-37701763~~chr21:38126208-38127589,
chr21:37700099-37701668~~chr21:38126009-38127720,
chr21:37700112-37701685~~chr21:38125778-38127688,
chr21:37700162-37701530~~chr21:38126218-38127536,
chr21:37710487-37712977~~chr21:38125804-38127970,
chr21:37710499-37712987~~chr21:38125763-38127934,
chr21:37710638-37713716~~chr21:38125790-38127981,
chr21:37710736-37713758~~chr21:38125761-38128067,
chr21:37711372-37713046~~chr21:38125725-38127860,
chr21:37711392-37713025~~chr21:38125767-38127866,
chr21:37711392-37713166~~chr21:38125754-38127987,
chr21:37711394-37712982~~chr21:38125749-38127915,
chr21:37711395-37713012~~chr21:38125801-38127928,
chr21:37711396-37712996~~chr21:38125971-38127690,
chr21:37711397-37713457~~chr21:38125740-38127873,
chr21:37711406-37712950~~chr21:38125771-38127931,
chr21:37711408-37712950~~chr21:38125778-38127949,
chr21:37711418-37712993~~chr21:38125791-38127926,
chr21:37711434-37712961~~chr21:38126151-38127594,
chr21:37711434-37712993~~chr21:38125779-38127911,
chr21:37711438-37713000~~chr21:38125779-38127948,
chr21:37711441-37713006~~chr21:38125941-38127948,
chr21:37711442-37712977~~chr21:38126150-38127604,
chr21:37711445-37712965~~chr21:38125778-38127688,
chr21:37711446-37713025~~chr21:38125798-38127942,
chr21:37711455-37712980~~chr21:38125790-38127976,
chr21:37711462-37712982~~chr21:38126125-38127630,
chr21:37711467-37712985~~chr21:38125934-38127923,
chr21:37711574-37712971~~chr21:38126041-38127628,
chr21:37711651-37712969~~chr21:38126216-38127622,
chr21:37717141-37718351~~chr21:38125790-38127976,
chr21:37725000-37750000~~chr21:38125000-38150000,
chr21:37750000-37775000~~chr21:38100000-38125000,
chr21:37750000-37775000~~chr21:38125000-38150000,
chr21:37757478-37760684~~chr21:38125761-38128067,
chr21:37758041-37760564~~chr21:38125790-38127981,
chr21:37758054-37760218~~chr21:38125818-38127945,
chr21:37758083-37760394~~chr21:38120483-38122671,
chr21:37758083-37760394~~chr21:38125791-38127988,
chr21:37758088-37760278~~chr21:38125754-38127987,
chr21:37758111-37760132~~chr21:38125778-38127688,
chr21:37758115-37760170~~chr21:38120552-38122290,
chr21:37758115-37760170~~chr21:38125779-38127948,
chr21:37758129-37760281~~chr21:38125791-38127926,
chr21:37758130-37760186~~chr21:38126066-38127958,
chr21:37758140-37760150~~chr21:38125798-38127942,
chr21:37758144-37760203~~chr21:38125941-38127948,
chr21:37758163-37760055~~chr21:38125763-38127934,
chr21:37758198-37760138~~chr21:38125801-38127928,
chr21:37758212-37760210~~chr21:38125779-38127911,
chr21:37758230-37760229~~chr21:38125749-38127915,
chr21:37758324-37760023~~chr21:38125804-38127970,
chr21:37758368-37760158~~chr21:38125770-38127709,
chr21:37758370-37760095~~chr21:38125971-38127690,
chr21:37758391-37760172~~chr21:38126009-38127637,
chr21:37758410-37759974~~chr21:38125958-38127687,
chr21:37758419-37759941~~chr21:38125927-38127658,
chr21:37758428-37759911~~chr21:38125778-38127949,
chr21:37758446-37759976~~chr21:38125725-38127860,
chr21:37758468-37759930~~chr21:38126131-38127619,
chr21:37758479-37759910~~chr21:38126125-38127630,
chr21:37758513-37759885~~chr21:38126191-38127689,
chr21:37758520-37759866~~chr21:38126208-38127589,
chr21:37758563-37759871~~chr21:38126251-38127506,
chr21:37800000-37825000~~chr21:38125000-38150000,
chr21:37900000-37925000~~chr21:38125000-38150000,
chr21:37915283-37917809~~chr21:38125779-38127911,
chr21:37915315-37917747~~chr21:38125798-38127942,
chr21:37915343-37917688~~chr21:38126066-38127958,
chr21:37915529-37918394~~chr21:38125749-38127915,
chr21:37915593-37917649~~chr21:38125927-38127658,
chr21:37915609-37917622~~chr21:38125799-38127662,
chr21:37950000-37975000~~chr21:38125000-38150000,
chr21:38000000-38025000~~chr21:38100000-38125000,
chr21:38038817-38040294~~chr21:38125790-38127976,
chr21:38038824-38040349~~chr21:38125769-38128010,
chr21:38125000-38150000~~chr21:38250000-38275000,
chr21:38125000-38150000~~chr21:38275000-38300000,