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Basic information

CohesinDB ID: CDBP00419092

Locus: chr21-38147929-38148377

Data sourse: ENCSR703TNG, GSE206145-GSE177045, GSE72082

Cell type: MCF-7

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Mau2,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 69% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 59%, "14_ReprPCWk": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CBX1, PPARG, FOXA2, CHD8, SIN3A, XBP1, FOXA1, RELA, CREBBP, ZNF384, AHR, MYC, SMARCA4, CHD7, RAD21, ARNT, HIF1A, PBX4, PRDM1, GATA3, TAL1, MAX, TP63, FOS, NR3C1, CEBPB, TRIM28, ESR1, TP53, GRHL2, SETDB1, PHOX2B, JUN, EP300, TFAP2A, ZFP28, HNF4A, AR, GATA2, BRD4, MBD2, TFAP2C

Target gene symbol (double-evidenced CRMs): HLCS,KCNJ15,KCNJ6

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000159267, ENSG00000157542, ENSG00000157551,

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Deatailed information for cohesin site CDBP00419092