- Basic information
- CohesinDB ID: CDBP00419094
- Locus: chr21-38155827-38157030
-
Data sourse: GSE206145-NatGen2015
-
Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,SA1,Rad21,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"14_ReprPCWk": 42%,
"15_Quies": 41%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: AR, NR3C1, PGR, LDB1, ZNF264, EZH2, SCRT1, BRD4, CBFB, PRDM9, ZNF563, ZNF667
- Target gene symbol (double-evidenced CRMs): ETS2,KCNJ6,DYRK1A,TTC3,ERG,KCNJ15,PSMG1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 22
- Related genes and loops
- Related gene:
ENSG00000182670,
ENSG00000157540,
ENSG00000157542,
ENSG00000157551,
ENSG00000157554,
ENSG00000157557,
ENSG00000183527,
- Related loop:
chr21:36125000-36150000~~chr21:38150000-38175000,
chr21:37150000-37175000~~chr21:38150000-38175000,
chr21:37450000-37475000~~chr21:38150000-38175000,
chr21:37525000-37550000~~chr21:38150000-38175000,
chr21:37699607-37702263~~chr21:38158064-38160479,
chr21:37700000-37725000~~chr21:38150000-38175000,
chr21:37750000-37775000~~chr21:38150000-38175000,
chr21:37900000-37925000~~chr21:38150000-38175000,
chr21:38025000-38050000~~chr21:38150000-38175000,
chr21:38050000-38075000~~chr21:38150000-38175000,
chr21:38150000-38175000~~chr21:38250000-38275000,
chr21:38150000-38175000~~chr21:38325000-38350000,
chr21:38150000-38175000~~chr21:38350000-38375000,
chr21:38150000-38175000~~chr21:38450000-38475000,
chr21:38150000-38175000~~chr21:38475000-38500000,
chr21:38150000-38175000~~chr21:38500000-38525000,
chr21:38150000-38175000~~chr21:38525000-38550000,
chr21:38150000-38175000~~chr21:38575000-38600000,
chr21:38150000-38175000~~chr21:38675000-38700000,
chr21:38150000-38175000~~chr21:38700000-38725000,
chr21:38150000-38175000~~chr21:38800000-38825000,
chr21:38150000-38175000~~chr21:39125000-39150000,
chr21:38150000-38175000~~chr21:39150000-39175000,
chr21:38158064-38160479~~chr21:38351388-38354007,
chr21:38158438-38160422~~chr21:38351780-38353719,
chr21:38158438-38160422~~chr21:38355261-38357283,
chr21:38158438-38160422~~chr21:38679162-38680418,
chr21:38158460-38160574~~chr21:38351759-38353738,
chr21:38158460-38160574~~chr21:38355341-38357288,
chr21:38158464-38160549~~chr21:38351519-38353809,
chr21:38158464-38160549~~chr21:38355287-38357113,
chr21:38158472-38160305~~chr21:38352098-38353429,
chr21:38158472-38160305~~chr21:38355322-38357346,
chr21:38158472-38160305~~chr21:39136790-39139170,
chr21:38158477-38160564~~chr21:38355436-38357215,
chr21:38158479-38160408~~chr21:38351572-38353692,
chr21:38158479-38160408~~chr21:38355442-38357264,
chr21:38158491-38160484~~chr21:38351556-38353703,
chr21:38158491-38160484~~chr21:38355373-38357156,
chr21:38158494-38160686~~chr21:38351797-38353501,
chr21:38158497-38160660~~chr21:38355246-38357158,
chr21:38158505-38160687~~chr21:38351815-38353489,
chr21:38158505-38160687~~chr21:38355129-38357200,
chr21:38158512-38160256~~chr21:38355303-38357092,
chr21:38158515-38160688~~chr21:38351774-38353531,
chr21:38158515-38160688~~chr21:38355109-38357144,
chr21:38158517-38160440~~chr21:38352008-38353488,
chr21:38158517-38160440~~chr21:38355104-38357300,
chr21:38158532-38160501~~chr21:38351536-38353710,
chr21:38158532-38160501~~chr21:38355168-38357210,
chr21:38158533-38160240~~chr21:38355310-38357176,
chr21:38158550-38160509~~chr21:38351755-38353771,
chr21:38158555-38160447~~chr21:38351543-38353716,
chr21:38158555-38160447~~chr21:38355432-38357106,
chr21:38158562-38160466~~chr21:38351763-38353495,
chr21:38158562-38160466~~chr21:38355294-38357093,
chr21:38158592-38160196~~chr21:38351760-38353699,
chr21:38158643-38160168~~chr21:38355395-38357114,
chr21:38158655-38160611~~chr21:38355161-38357075,
chr21:38158678-38160534~~chr21:38351658-38353626,
chr21:38158678-38160534~~chr21:38355381-38356880,
chr21:38158688-38160510~~chr21:38351614-38353621,
chr21:38158688-38160510~~chr21:38355333-38356894,
chr21:38158704-38160403~~chr21:38351897-38353541,
chr21:38158704-38160403~~chr21:38355373-38356883,
chr21:38158707-38160293~~chr21:38352000-38353494,
chr21:38158707-38160293~~chr21:38355328-38356918,
chr21:38158708-38160246~~chr21:38355356-38356896,
chr21:38158716-38160282~~chr21:38355434-38357110,
chr21:38158728-38160387~~chr21:38355416-38357087,
chr21:38158739-38160366~~chr21:38352028-38353492,
chr21:38158743-38160234~~chr21:38355460-38356861,
chr21:38158760-38160183~~chr21:38352107-38353483,
chr21:38158776-38160250~~chr21:38355359-38356908,