- Basic information
- CohesinDB ID: CDBP00419099
- Locus: chr21-38175092-38176450
-
Data sourse: GSE206145, GSE206145-NatGen2015
-
Cell type: RPE, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SA1,Rad21,SA2,Mau2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 65%,
"5_TxWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: MED1, NR3C1, CEBPB, HNF1A, BRD4, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:36125000-36150000~~chr21:38150000-38175000,
chr21:37150000-37175000~~chr21:38150000-38175000,
chr21:37450000-37475000~~chr21:38150000-38175000,
chr21:37525000-37550000~~chr21:38150000-38175000,
chr21:37699790-37701835~~chr21:38169663-38172851,
chr21:37699800-37701800~~chr21:38169503-38172844,
chr21:37700000-37725000~~chr21:38150000-38175000,
chr21:37710736-37713758~~chr21:38169391-38172834,
chr21:37750000-37775000~~chr21:38150000-38175000,
chr21:37758533-37759896~~chr21:38169685-38171409,
chr21:37900000-37925000~~chr21:38150000-38175000,
chr21:38025000-38050000~~chr21:38150000-38175000,
chr21:38050000-38075000~~chr21:38150000-38175000,
chr21:38150000-38175000~~chr21:38250000-38275000,
chr21:38150000-38175000~~chr21:38325000-38350000,
chr21:38150000-38175000~~chr21:38350000-38375000,
chr21:38150000-38175000~~chr21:38450000-38475000,
chr21:38150000-38175000~~chr21:38475000-38500000,
chr21:38150000-38175000~~chr21:38500000-38525000,
chr21:38150000-38175000~~chr21:38525000-38550000,
chr21:38150000-38175000~~chr21:38575000-38600000,
chr21:38150000-38175000~~chr21:38675000-38700000,
chr21:38150000-38175000~~chr21:38700000-38725000,
chr21:38150000-38175000~~chr21:38800000-38825000,
chr21:38150000-38175000~~chr21:39125000-39150000,
chr21:38150000-38175000~~chr21:39150000-39175000,
chr21:38168921-38172969~~chr21:38351388-38354007,
chr21:38168921-38172969~~chr21:38355308-38357138,
chr21:38169391-38172834~~chr21:38351519-38353809,
chr21:38169391-38172834~~chr21:38355287-38357113,
chr21:38169392-38171332~~chr21:38355303-38357092,
chr21:38169393-38172925~~chr21:38351593-38353768,
chr21:38169393-38172925~~chr21:38355270-38357080,
chr21:38169395-38172860~~chr21:38351805-38353487,
chr21:38169406-38172795~~chr21:38351556-38353703,
chr21:38169406-38172795~~chr21:38355373-38357156,
chr21:38169408-38172862~~chr21:38351749-38353560,
chr21:38169408-38172862~~chr21:38355275-38357287,
chr21:38169412-38171457~~chr21:38355400-38357081,
chr21:38169413-38172889~~chr21:38351590-38353720,
chr21:38169413-38172889~~chr21:38355436-38357215,
chr21:38169421-38173026~~chr21:38351766-38353517,
chr21:38169425-38172841~~chr21:38351765-38353522,
chr21:38169425-38172841~~chr21:38355429-38357149,
chr21:38169425-38172871~~chr21:38332986-38334989,
chr21:38169425-38172871~~chr21:38351543-38353716,
chr21:38169425-38172871~~chr21:38355432-38357106,
chr21:38169431-38172923~~chr21:38351815-38353483,
chr21:38169431-38172923~~chr21:38355247-38357226,
chr21:38169436-38172885~~chr21:38351780-38353719,
chr21:38169436-38172885~~chr21:38355261-38357283,
chr21:38169437-38172832~~chr21:38351811-38353488,
chr21:38169437-38172832~~chr21:38355272-38357307,
chr21:38169440-38171323~~chr21:38355312-38357145,
chr21:38169443-38172811~~chr21:38333263-38334900,
chr21:38169443-38172811~~chr21:38351572-38353692,
chr21:38169443-38172811~~chr21:38355442-38357264,
chr21:38169465-38173021~~chr21:38355421-38357213,
chr21:38169473-38172909~~chr21:38351780-38353737,
chr21:38169473-38172909~~chr21:38355149-38357340,
chr21:38169473-38172942~~chr21:38355312-38357194,
chr21:38169493-38171402~~chr21:38333009-38334920,
chr21:38169503-38172844~~chr21:38351614-38353906,
chr21:38169503-38172844~~chr21:38355310-38357176,
chr21:38169607-38172911~~chr21:38333088-38334845,
chr21:38169607-38172911~~chr21:38351614-38353621,
chr21:38169607-38172911~~chr21:38355333-38356894,
chr21:38169609-38171415~~chr21:38355294-38357093,
chr21:38169613-38172851~~chr21:38351536-38353710,
chr21:38169613-38172851~~chr21:38355168-38357210,
chr21:38169637-38172851~~chr21:38351843-38353523,
chr21:38169637-38172851~~chr21:38355447-38357193,
chr21:38169638-38171749~~chr21:38355395-38357114,
chr21:38169638-38171988~~chr21:38355104-38357300,
chr21:38169643-38171409~~chr21:38351781-38353572,
chr21:38169643-38171409~~chr21:38355258-38357082,
chr21:38169654-38171570~~chr21:38351658-38353626,
chr21:38169654-38171570~~chr21:38355381-38356880,
chr21:38169658-38171272~~chr21:38355161-38357075,
chr21:38169663-38171565~~chr21:38355109-38357144,
chr21:38169663-38172851~~chr21:38351755-38353771,
chr21:38169663-38172851~~chr21:38355274-38357174,
chr21:38169671-38172873~~chr21:38351759-38353738,
chr21:38169671-38172873~~chr21:38355341-38357288,
chr21:38169673-38172564~~chr21:38351792-38353520,
chr21:38169685-38171409~~chr21:38351897-38353541,
chr21:38169685-38171409~~chr21:38355373-38356883,
chr21:38169689-38171445~~chr21:38351760-38353699,
chr21:38169726-38171585~~chr21:38355412-38356939,
chr21:38169739-38171172~~chr21:38355460-38356861,
chr21:38169739-38171429~~chr21:38352055-38353538,
chr21:38169791-38171530~~chr21:38333322-38334861,
chr21:38169791-38171530~~chr21:38351797-38353501,
chr21:38169794-38171068~~chr21:38351992-38353549,
chr21:38169819-38171017~~chr21:38355322-38357346,
chr21:38171677-38172881~~chr21:38351658-38353626,