- Basic information
- CohesinDB ID: CDBP00419106
- Locus: chr21-38195984-38196400
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Data sourse: GSE98367, GSE67783, ENCSR153HNT, GSE73207
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Cell type: K-562, TF-1, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SMC1,SA1,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 70%,
"9_Het": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, SKI, NCOA2, CBFA2T2, SMC1A, CHD8, CEBPA, FOXA2, RUNX1T1, KDM4C, ZFX, SOX2, XBP1, MEIS1, STAT1, FOXA1, SUZ12, CDK9, HOXB13, ZNF549, ERG, KDM1A, RELA, CREBBP, YY1, TFAP4, LYL1, ETS1, EZH1, RUNX2, ARID1B, RAD21, GRHL3, HMGB2, GABPA, TAL1, ETV6, NRIP1, ZNF143, IKZF1, NFE2, VDR, KLF4, JMJD1C, CEBPB, NCOA3, ELF1, TRIM28, MYB, CREB1, NR3C1, EZH2, LMO2, ESR1, MLL, NCOA1, GRHL2, MYOD1, GABPB1, CTCF, JUN, TCF12, SPI1, PHOX2B, NR4A1, AR, GATA2, EGR1, POU2F3, FLI1, NOTCH3, BRD4, TCF3, MAZ, SMC1, SMC3, ZNF175, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops