- Basic information
- CohesinDB ID: CDBP00419111
- Locus: chr21-38212844-38213198
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Data sourse: GSE206145-NatGen2015
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Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 63%,
"14_ReprPCWk": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, AR, CEBPB, CHD8, TRIM28, CDK6, SOX2, ELF3, EZH2, XBP1, ARNT, NCOR1, HLF, ZNF334, NCOA2, CTCF, ZNF143
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
- Related loop:
chr21:37711375-37712997~~chr21:38217749-38220501,
chr21:38200000-38225000~~chr21:38325000-38350000,
chr21:38200000-38225000~~chr21:38350000-38375000,
chr21:38200000-38225000~~chr21:39125000-39150000,
chr21:38217578-38220086~~chr21:38355395-38357114,
chr21:38217588-38220774~~chr21:38306391-38309235,
chr21:38217588-38220774~~chr21:38351519-38353809,
chr21:38217605-38220361~~chr21:38351614-38353906,
chr21:38217621-38220381~~chr21:38351763-38353495,
chr21:38217621-38220381~~chr21:38355294-38357093,
chr21:38217626-38220346~~chr21:38333196-38334782,
chr21:38217626-38220346~~chr21:38351536-38353710,
chr21:38217626-38220346~~chr21:38355168-38357210,
chr21:38217685-38220291~~chr21:38351781-38353572,
chr21:38217688-38220265~~chr21:38351593-38353768,
chr21:38217688-38220549~~chr21:38333075-38334923,
chr21:38217688-38220549~~chr21:38351780-38353737,
chr21:38217709-38220323~~chr21:38332991-38334912,
chr21:38217709-38220323~~chr21:38351774-38353531,
chr21:38217709-38220323~~chr21:38355109-38357144,
chr21:38217709-38220561~~chr21:38333187-38334926,
chr21:38217709-38220561~~chr21:38351755-38353771,
chr21:38217729-38219955~~chr21:38351766-38353517,
chr21:38217749-38220501~~chr21:38351749-38353560,
chr21:38217759-38220837~~chr21:38351388-38354007,
chr21:38217768-38220595~~chr21:38332986-38334989,
chr21:38217768-38220595~~chr21:38351543-38353716,
chr21:38217805-38219943~~chr21:38351838-38353524,