- Basic information
- CohesinDB ID: CDBP00419112
- Locus: chr21-38216497-38222875
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE36578, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE130140, GSE115248, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE73207, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: GM2610, CUTLL1, B-cell, Fibroblast, GM12890, BCBL-1, HFFc6, SNYDER, GM18505, MB157, GM12878, SK-N-SH, GM19193, MCF-7, Hela-Kyoto, HEK293T, HCAEC, OCI-AML-3, GM10847, SLK, GP5d, GM2630, HEKn, hLCL, IMR-90, GM18486, DKO, H1-hESC, Monocytes, TF-1, CNCCs-H9ESC, HeLa-Tet-On, THP-1, HUES64, HeLa, BGO3, TC-71, Neutrophil, CVB-hiPSC, CVI-hiPSC, Liver, TC-32, H9-hESC, HeLa-S3, GM2255, GM18526, Lymphoblast, GM12891, GM2588, GBM39, GM19239, RT-112, Macrophage, GM12892, HCT-116, MCF-10A, Hep-G2, Neurons-H1, HUVEC, HSPC, HAP1, MDM, RH4, GM19240, Transformed-RPE1, HuCC-T1, RPE, HMEC, Ishikawa, Kelly, K-562, Leukemia-SEM, HUES9, GM19099, HL-60, A-549, GM19238, CNCC-WT33iPSC, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 84% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.111
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 38%,
"9_Het": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, CBX2, FOXO1, CHD8, GATA2, TOP2A, SOX2, ZFX, EZH2, XBP1, ESR1, WT1
- Target gene symbol (double-evidenced CRMs): KCNJ6,KCNJ15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157542,
ENSG00000157551,
- Related loop:
chr21:17775000-17800000~~chr21:38225000-38250000,
chr21:25200000-25225000~~chr21:38225000-38250000,
chr21:25450000-25475000~~chr21:38225000-38250000,
chr21:36500000-36525000~~chr21:38225000-38250000,
chr21:37250000-37275000~~chr21:38225000-38250000,
chr21:37325000-37350000~~chr21:38225000-38250000,
chr21:37711375-37712997~~chr21:38217749-38220501,
chr21:38200000-38225000~~chr21:38325000-38350000,
chr21:38200000-38225000~~chr21:38350000-38375000,
chr21:38200000-38225000~~chr21:39125000-39150000,
chr21:38217578-38220086~~chr21:38355395-38357114,
chr21:38217588-38220774~~chr21:38306391-38309235,
chr21:38217588-38220774~~chr21:38351519-38353809,
chr21:38217605-38220361~~chr21:38351614-38353906,
chr21:38217621-38220381~~chr21:38351763-38353495,
chr21:38217621-38220381~~chr21:38355294-38357093,
chr21:38217626-38220346~~chr21:38333196-38334782,
chr21:38217626-38220346~~chr21:38351536-38353710,
chr21:38217626-38220346~~chr21:38355168-38357210,
chr21:38217685-38220291~~chr21:38351781-38353572,
chr21:38217688-38220265~~chr21:38351593-38353768,
chr21:38217688-38220549~~chr21:38333075-38334923,
chr21:38217688-38220549~~chr21:38351780-38353737,
chr21:38217709-38220323~~chr21:38332991-38334912,
chr21:38217709-38220323~~chr21:38351774-38353531,
chr21:38217709-38220323~~chr21:38355109-38357144,
chr21:38217709-38220561~~chr21:38333187-38334926,
chr21:38217709-38220561~~chr21:38351755-38353771,
chr21:38217729-38219955~~chr21:38351766-38353517,
chr21:38217749-38220501~~chr21:38351749-38353560,
chr21:38217759-38220837~~chr21:38351388-38354007,
chr21:38217768-38220595~~chr21:38332986-38334989,
chr21:38217768-38220595~~chr21:38351543-38353716,
chr21:38217805-38219943~~chr21:38351838-38353524,
chr21:38218492-38220499~~chr21:38268300-38270566,
chr21:38218492-38220499~~chr21:38333009-38334920,
chr21:38218492-38220499~~chr21:38351815-38353489,
chr21:38218492-38220499~~chr21:38355129-38357200,
chr21:38218497-38220085~~chr21:38333337-38334718,
chr21:38218497-38220085~~chr21:38351897-38353541,
chr21:38218497-38220085~~chr21:38355373-38356883,
chr21:38218498-38220352~~chr21:38352012-38353500,
chr21:38218500-38220283~~chr21:38333263-38334900,
chr21:38218500-38220283~~chr21:38351572-38353692,
chr21:38218500-38220283~~chr21:38355442-38357264,
chr21:38218500-38220310~~chr21:38351875-38353481,
chr21:38218503-38220700~~chr21:38351780-38353719,
chr21:38218504-38220373~~chr21:38351792-38353520,
chr21:38218505-38220065~~chr21:38351814-38353481,
chr21:38218505-38220282~~chr21:38355104-38357300,
chr21:38218509-38219928~~chr21:38352052-38353415,
chr21:38218510-38220955~~chr21:38333322-38334861,
chr21:38218512-38220009~~chr21:38352055-38353538,
chr21:38218512-38220009~~chr21:38355356-38356896,
chr21:38218512-38220118~~chr21:38332997-38334857,
chr21:38218512-38220118~~chr21:38351759-38353738,
chr21:38218512-38220522~~chr21:38351556-38353703,
chr21:38218514-38220553~~chr21:38351590-38353720,
chr21:38218516-38219956~~chr21:38351811-38353488,
chr21:38218516-38219956~~chr21:38355272-38357307,
chr21:38218516-38219969~~chr21:38352051-38353470,
chr21:38218516-38219969~~chr21:38355369-38357072,
chr21:38218517-38219935~~chr21:38332987-38334778,
chr21:38218517-38219935~~chr21:38351874-38353525,
chr21:38218517-38219935~~chr21:38355161-38357075,
chr21:38218520-38219979~~chr21:38352000-38353494,
chr21:38218520-38219979~~chr21:38355328-38356918,
chr21:38218522-38220350~~chr21:38333105-38334942,
chr21:38218525-38220282~~chr21:38351823-38353474,
chr21:38218525-38220282~~chr21:38355110-38357173,
chr21:38218526-38220277~~chr21:38352006-38353463,
chr21:38218526-38220277~~chr21:38355325-38357124,
chr21:38218526-38220331~~chr21:38351815-38353483,
chr21:38218529-38220306~~chr21:38351817-38353514,
chr21:38218530-38220189~~chr21:38267684-38270477,
chr21:38218530-38220189~~chr21:38351614-38353621,
chr21:38218533-38220068~~chr21:38351658-38353626,
chr21:38218536-38220067~~chr21:38333105-38334888,
chr21:38218542-38220260~~chr21:38352061-38353470,
chr21:38218542-38220260~~chr21:38355434-38357110,
chr21:38218546-38219987~~chr21:38269172-38270349,
chr21:38218546-38219987~~chr21:38352028-38353492,
chr21:38218546-38220113~~chr21:38351992-38353549,
chr21:38218546-38220113~~chr21:38355359-38356908,
chr21:38218571-38219982~~chr21:38352050-38353432,
chr21:38225000-38250000~~chr21:38325000-38350000,
chr21:38225000-38250000~~chr21:38350000-38375000,
chr21:38225000-38250000~~chr21:42225000-42250000,