- Basic information
- CohesinDB ID: CDBP00419113
- Locus: chr21-38223802-38224644
-
Data sourse: GSE105004, GSE93080, GSE98367, GSE138405, GSE76893, GSE105028, GSE85526, GSE206145, ENCSR620NWG, GSE68388, GSE126990, ENCSR330ELC, GSE126755
-
Cell type: RPE, Macrophage, Hela-Kyoto, HEKn, HEK293T, GM12878, A-549, HeLa, Neutrophil, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
69% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"9_Het": 81%,
"15_Quies": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZNF391, CBX5, ZSCAN5C, FOXA1, SUZ12, ZNF529, ZBTB7B, ZNF112, ZBTB44, ZNF444, KLF14, ZNF189, MITF, ZNF320, JMJD1C, KLF5, ZNF586, TRIM28, ELF1, KLF6, ZNF217, LMO2, ZNF23, ZNF561, ZNF577, TCF12, JUN, EP300, GATA6, TRIM24, ZNF528, ZNF350, ZNF280A, TEAD4, ZNF555, EHMT2, POU2F2, XRCC3, POU5F1, ZSCAN21, ZNF317, ZBTB48, STAT1, BAHD1, SP4, HOXC5, ZNF626, RFX1, ZNF8, XRCC5, RCOR1, ZNF595, ZNF639, NR3C1, CEBPB, ZNF560, ZNF669, KLF8, GRHL2, SPI1, HDAC2, INTS13, ZNF490, RELB, ZNF554, RUNX1, CBX1, SMC1A, CEBPA, ZNF747, PALB2, ZFP37, ZNF513, ZNF549, CEBPZ, CREBBP, NOTCH1, ZNF169, GATA4, ZNF184, ARNT, ATF2, ZEB2, ZNF518A, ZNF10, NR2C1, ZNF558, ZXDB, ZNF680, PIAS1, KLF9, SETDB1, ZNF37A, USF1, SP1, ATF7, TCF3, SMC3, ZNF816, SKI, CBX3, MTA3, GTF2B, ZNF30, WT1, ZNF662, ZNF574, HOXB13, MPHOSPH8, KDM1A, ZNF19, YY1, TARDBP, ZNF148, CHAMP1, ZNF510, ZNF155, ZFP36, SKIL, HIF1A, ZNF311, ZNF143, GATA1, SP7, ZNF544, ZNF547, AR, RBAK, ZNF324, ZNF280D, RB1, BRD4, ZNF248, SCRT1, ZSCAN23, ZNF24, ZNF316
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:17775000-17800000~~chr21:38225000-38250000,
chr21:25200000-25225000~~chr21:38225000-38250000,
chr21:25450000-25475000~~chr21:38225000-38250000,
chr21:36500000-36525000~~chr21:38225000-38250000,
chr21:37250000-37275000~~chr21:38225000-38250000,
chr21:37325000-37350000~~chr21:38225000-38250000,
chr21:37711375-37712997~~chr21:38217749-38220501,
chr21:38200000-38225000~~chr21:38325000-38350000,
chr21:38200000-38225000~~chr21:38350000-38375000,
chr21:38200000-38225000~~chr21:39125000-39150000,
chr21:38217578-38220086~~chr21:38355395-38357114,
chr21:38217588-38220774~~chr21:38306391-38309235,
chr21:38217588-38220774~~chr21:38351519-38353809,
chr21:38217605-38220361~~chr21:38351614-38353906,
chr21:38217621-38220381~~chr21:38351763-38353495,
chr21:38217621-38220381~~chr21:38355294-38357093,
chr21:38217626-38220346~~chr21:38333196-38334782,
chr21:38217626-38220346~~chr21:38351536-38353710,
chr21:38217626-38220346~~chr21:38355168-38357210,
chr21:38217685-38220291~~chr21:38351781-38353572,
chr21:38217688-38220265~~chr21:38351593-38353768,
chr21:38217688-38220549~~chr21:38333075-38334923,
chr21:38217688-38220549~~chr21:38351780-38353737,
chr21:38217709-38220323~~chr21:38332991-38334912,
chr21:38217709-38220323~~chr21:38351774-38353531,
chr21:38217709-38220323~~chr21:38355109-38357144,
chr21:38217709-38220561~~chr21:38333187-38334926,
chr21:38217709-38220561~~chr21:38351755-38353771,
chr21:38217729-38219955~~chr21:38351766-38353517,
chr21:38217749-38220501~~chr21:38351749-38353560,
chr21:38217759-38220837~~chr21:38351388-38354007,
chr21:38217768-38220595~~chr21:38332986-38334989,
chr21:38217768-38220595~~chr21:38351543-38353716,
chr21:38217805-38219943~~chr21:38351838-38353524,
chr21:38218492-38220499~~chr21:38268300-38270566,
chr21:38218492-38220499~~chr21:38333009-38334920,
chr21:38218492-38220499~~chr21:38351815-38353489,
chr21:38218492-38220499~~chr21:38355129-38357200,
chr21:38218497-38220085~~chr21:38333337-38334718,
chr21:38218497-38220085~~chr21:38351897-38353541,
chr21:38218497-38220085~~chr21:38355373-38356883,
chr21:38218498-38220352~~chr21:38352012-38353500,
chr21:38218500-38220283~~chr21:38333263-38334900,
chr21:38218500-38220283~~chr21:38351572-38353692,
chr21:38218500-38220283~~chr21:38355442-38357264,
chr21:38218500-38220310~~chr21:38351875-38353481,
chr21:38218503-38220700~~chr21:38351780-38353719,
chr21:38218504-38220373~~chr21:38351792-38353520,
chr21:38218505-38220065~~chr21:38351814-38353481,
chr21:38218505-38220282~~chr21:38355104-38357300,
chr21:38218509-38219928~~chr21:38352052-38353415,
chr21:38218510-38220955~~chr21:38333322-38334861,
chr21:38218512-38220009~~chr21:38352055-38353538,
chr21:38218512-38220009~~chr21:38355356-38356896,
chr21:38218512-38220118~~chr21:38332997-38334857,
chr21:38218512-38220118~~chr21:38351759-38353738,
chr21:38218512-38220522~~chr21:38351556-38353703,
chr21:38218514-38220553~~chr21:38351590-38353720,
chr21:38218516-38219956~~chr21:38351811-38353488,
chr21:38218516-38219956~~chr21:38355272-38357307,
chr21:38218516-38219969~~chr21:38352051-38353470,
chr21:38218516-38219969~~chr21:38355369-38357072,
chr21:38218517-38219935~~chr21:38332987-38334778,
chr21:38218517-38219935~~chr21:38351874-38353525,
chr21:38218517-38219935~~chr21:38355161-38357075,
chr21:38218520-38219979~~chr21:38352000-38353494,
chr21:38218520-38219979~~chr21:38355328-38356918,
chr21:38218522-38220350~~chr21:38333105-38334942,
chr21:38218525-38220282~~chr21:38351823-38353474,
chr21:38218525-38220282~~chr21:38355110-38357173,
chr21:38218526-38220277~~chr21:38352006-38353463,
chr21:38218526-38220277~~chr21:38355325-38357124,
chr21:38218526-38220331~~chr21:38351815-38353483,
chr21:38218529-38220306~~chr21:38351817-38353514,
chr21:38218530-38220189~~chr21:38267684-38270477,
chr21:38218530-38220189~~chr21:38351614-38353621,
chr21:38218533-38220068~~chr21:38351658-38353626,
chr21:38218536-38220067~~chr21:38333105-38334888,
chr21:38218542-38220260~~chr21:38352061-38353470,
chr21:38218542-38220260~~chr21:38355434-38357110,
chr21:38218546-38219987~~chr21:38269172-38270349,
chr21:38218546-38219987~~chr21:38352028-38353492,
chr21:38218546-38220113~~chr21:38351992-38353549,
chr21:38218546-38220113~~chr21:38355359-38356908,
chr21:38218571-38219982~~chr21:38352050-38353432,
chr21:38225000-38250000~~chr21:38325000-38350000,
chr21:38225000-38250000~~chr21:38350000-38375000,
chr21:38225000-38250000~~chr21:42225000-42250000,